Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11905

Experiment: LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11895 and BWI76_RS11900 overlap by 29 nucleotidesBWI76_RS11900 and BWI76_RS11905 overlap by 4 nucleotidesBWI76_RS11905 and BWI76_RS11910 overlap by 6 nucleotidesBWI76_RS11910 and BWI76_RS11915 overlap by 1 nucleotides BWI76_RS11895: BWI76_RS11895 - AraC family transcriptional regulator, at 2,504,316 to 2,505,290 _RS11895 BWI76_RS11900: BWI76_RS11900 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 2,505,262 to 2,505,852 _RS11900 BWI76_RS11905: BWI76_RS11905 - NAD(P)-dependent oxidoreductase, at 2,505,849 to 2,506,610 _RS11905 BWI76_RS11910: BWI76_RS11910 - hypothetical protein, at 2,506,605 to 2,506,820 _RS11910 BWI76_RS11915: BWI76_RS11915 - protease SohB, at 2,506,820 to 2,507,911 _RS11915 Position (kb) 2505 2506 2507Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2505.106 kb on - strand, within BWI76_RS11895at 2505.235 kb on + strandat 2505.235 kb on + strandat 2505.322 kb on - strand, within BWI76_RS11900at 2505.820 kb on + strandat 2506.228 kb on - strand, within BWI76_RS11905at 2506.821 kb on + strandat 2507.022 kb on + strand, within BWI76_RS11915at 2507.202 kb on + strand, within BWI76_RS11915at 2507.405 kb on + strand, within BWI76_RS11915

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
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2,505,106 - BWI76_RS11895 0.81 -1.3
2,505,235 + -1.2
2,505,235 + -0.1
2,505,322 - BWI76_RS11900 0.10 +2.0
2,505,820 + -0.0
2,506,228 - BWI76_RS11905 0.50 +1.0
2,506,821 + -0.4
2,507,022 + BWI76_RS11915 0.18 -0.3
2,507,202 + BWI76_RS11915 0.35 -2.8
2,507,405 + BWI76_RS11915 0.54 +0.4

Or see this region's nucleotide sequence