Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21825

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21820 and ABZR87_RS21825 are separated by 117 nucleotidesABZR87_RS21825 and ABZR87_RS21830 overlap by 17 nucleotidesABZR87_RS21830 and ABZR87_RS21835 overlap by 11 nucleotides ABZR87_RS21820: ABZR87_RS21820 - alpha/beta hydrolase, at 1,278,602 to 1,279,489 _RS21820 ABZR87_RS21825: ABZR87_RS21825 - metalloregulator ArsR/SmtB family transcription factor, at 1,279,607 to 1,279,963 _RS21825 ABZR87_RS21830: ABZR87_RS21830 - SRPBCC family protein, at 1,279,947 to 1,280,909 _RS21830 ABZR87_RS21835: ABZR87_RS21835 - hypothetical protein, at 1,280,899 to 1,281,024 _RS21835 Position (kb) 1279 1280Strain fitness (log2 ratio) -1 0 1 2at 1278.832 kb on - strand, within ABZR87_RS21820at 1278.901 kb on - strand, within ABZR87_RS21820at 1278.987 kb on + strand, within ABZR87_RS21820at 1278.987 kb on + strand, within ABZR87_RS21820at 1278.987 kb on + strand, within ABZR87_RS21820at 1278.988 kb on - strand, within ABZR87_RS21820at 1279.303 kb on - strand, within ABZR87_RS21820at 1279.308 kb on + strand, within ABZR87_RS21820at 1279.308 kb on + strand, within ABZR87_RS21820at 1279.308 kb on + strand, within ABZR87_RS21820at 1279.308 kb on + strand, within ABZR87_RS21820at 1279.308 kb on + strand, within ABZR87_RS21820at 1279.309 kb on - strand, within ABZR87_RS21820at 1279.309 kb on - strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.359 kb on + strand, within ABZR87_RS21820at 1279.360 kb on - strand, within ABZR87_RS21820at 1279.360 kb on - strand, within ABZR87_RS21820at 1279.360 kb on - strand, within ABZR87_RS21820at 1279.360 kb on - strand, within ABZR87_RS21820at 1279.577 kb on + strandat 1279.613 kb on - strandat 1279.913 kb on + strand, within ABZR87_RS21825at 1279.913 kb on + strand, within ABZR87_RS21825at 1279.914 kb on - strand, within ABZR87_RS21825at 1279.914 kb on - strand, within ABZR87_RS21825at 1279.914 kb on - strand, within ABZR87_RS21825at 1280.572 kb on - strand, within ABZR87_RS21830at 1280.703 kb on + strand, within ABZR87_RS21830at 1280.703 kb on + strand, within ABZR87_RS21830at 1280.703 kb on + strand, within ABZR87_RS21830at 1280.704 kb on - strand, within ABZR87_RS21830at 1280.704 kb on - strand, within ABZR87_RS21830at 1280.709 kb on + strand, within ABZR87_RS21830at 1280.709 kb on + strand, within ABZR87_RS21830at 1280.709 kb on + strand, within ABZR87_RS21830at 1280.709 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.835 kb on + strandat 1280.835 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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1,278,832 - ABZR87_RS21820 0.26 -0.6
1,278,901 - ABZR87_RS21820 0.34 -0.6
1,278,987 + ABZR87_RS21820 0.43 +0.2
1,278,987 + ABZR87_RS21820 0.43 -0.2
1,278,987 + ABZR87_RS21820 0.43 -0.1
1,278,988 - ABZR87_RS21820 0.43 +0.2
1,279,303 - ABZR87_RS21820 0.79 +0.6
1,279,308 + ABZR87_RS21820 0.80 +0.2
1,279,308 + ABZR87_RS21820 0.80 +0.6
1,279,308 + ABZR87_RS21820 0.80 -0.3
1,279,308 + ABZR87_RS21820 0.80 -0.1
1,279,308 + ABZR87_RS21820 0.80 -0.6
1,279,309 - ABZR87_RS21820 0.80 -0.8
1,279,309 - ABZR87_RS21820 0.80 -0.8
1,279,359 + ABZR87_RS21820 0.85 +0.5
1,279,359 + ABZR87_RS21820 0.85 -0.3
1,279,359 + ABZR87_RS21820 0.85 -0.4
1,279,359 + ABZR87_RS21820 0.85 +0.3
1,279,359 + ABZR87_RS21820 0.85 -0.6
1,279,359 + ABZR87_RS21820 0.85 +0.4
1,279,359 + ABZR87_RS21820 0.85 -0.2
1,279,360 - ABZR87_RS21820 0.85 -0.1
1,279,360 - ABZR87_RS21820 0.85 -0.1
1,279,360 - ABZR87_RS21820 0.85 +0.3
1,279,360 - ABZR87_RS21820 0.85 +0.2
1,279,577 + +0.7
1,279,613 - -0.2
1,279,913 + ABZR87_RS21825 0.86 +1.0
1,279,913 + ABZR87_RS21825 0.86 -0.6
1,279,914 - ABZR87_RS21825 0.86 -0.9
1,279,914 - ABZR87_RS21825 0.86 -0.5
1,279,914 - ABZR87_RS21825 0.86 -1.0
1,280,572 - ABZR87_RS21830 0.65 +0.9
1,280,703 + ABZR87_RS21830 0.79 +0.9
1,280,703 + ABZR87_RS21830 0.79 -0.4
1,280,703 + ABZR87_RS21830 0.79 +0.7
1,280,704 - ABZR87_RS21830 0.79 +2.1
1,280,704 - ABZR87_RS21830 0.79 -1.6
1,280,709 + ABZR87_RS21830 0.79 -0.5
1,280,709 + ABZR87_RS21830 0.79 -1.6
1,280,709 + ABZR87_RS21830 0.79 -0.6
1,280,709 - ABZR87_RS21830 0.79 +0.2
1,280,710 - ABZR87_RS21830 0.79 -0.1
1,280,710 - ABZR87_RS21830 0.79 +0.1
1,280,710 - ABZR87_RS21830 0.79 -1.1
1,280,710 - ABZR87_RS21830 0.79 +0.0
1,280,835 + +0.3
1,280,835 + -0.5

Or see this region's nucleotide sequence