Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21505

Experiment: LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS21500 and BWI76_RS21505 are separated by 54 nucleotidesBWI76_RS21505 and BWI76_RS21510 are separated by 120 nucleotidesBWI76_RS21510 and BWI76_RS21515 are separated by 39 nucleotides BWI76_RS21500: BWI76_RS21500 - membrane protein, at 4,503,460 to 4,504,830 _RS21500 BWI76_RS21505: BWI76_RS21505 - hypothetical protein, at 4,504,885 to 4,505,322 _RS21505 BWI76_RS21510: BWI76_RS21510 - 50S ribosomal protein L19, at 4,505,443 to 4,505,790 _RS21510 BWI76_RS21515: BWI76_RS21515 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 4,505,830 to 4,506,597 _RS21515 Position (kb) 4504 4505 4506Strain fitness (log2 ratio) -2 -1 0 1at 4503.891 kb on + strand, within BWI76_RS21500at 4504.376 kb on + strand, within BWI76_RS21500at 4504.688 kb on - strand, within BWI76_RS21500at 4504.802 kb on - strandat 4504.808 kb on - strandat 4504.940 kb on - strand, within BWI76_RS21505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
remove
4,503,891 + BWI76_RS21500 0.31 -0.2
4,504,376 + BWI76_RS21500 0.67 +1.0
4,504,688 - BWI76_RS21500 0.90 -0.3
4,504,802 - +0.0
4,504,808 - -2.1
4,504,940 - BWI76_RS21505 0.13 -1.2

Or see this region's nucleotide sequence