Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0380

Experiment: MoLS4 with Malate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0378 and DVU0379 are separated by 22 nucleotidesDVU0379 and DVU0380 are separated by 43 nucleotidesDVU0380 and nhaC-1 are separated by 47 nucleotides DVU0378: DVU0378 - thioredoxin, putative (TIGR), at 428,443 to 428,757 DVU0378 DVU0379: DVU0379 - transcriptional regulator, putative (TIGR), at 428,780 to 429,457 DVU0379 DVU0380: DVU0380 - sulfatase, putative (TIGR), at 429,501 to 431,063 DVU0380 DVU0381: nhaC-1 - Na+/H+ antiporter NhaC (TIGR), at 431,111 to 432,502 nhaC-1 Position (kb) 429 430 431 432Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 428.568 kb on + strand, within DVU0378at 428.568 kb on + strand, within DVU0378at 428.651 kb on + strand, within DVU0378at 428.664 kb on + strand, within DVU0378at 428.786 kb on - strandat 428.940 kb on + strand, within DVU0379at 428.949 kb on + strand, within DVU0379at 428.957 kb on - strand, within DVU0379at 429.022 kb on - strand, within DVU0379at 429.077 kb on - strand, within DVU0379at 429.227 kb on - strand, within DVU0379at 429.272 kb on - strand, within DVU0379at 429.317 kb on + strand, within DVU0379at 429.402 kb on - strandat 429.411 kb on - strandat 429.500 kb on + strandat 429.628 kb on + strandat 429.671 kb on - strand, within DVU0380at 429.859 kb on + strand, within DVU0380at 429.890 kb on + strand, within DVU0380at 429.890 kb on + strand, within DVU0380at 429.890 kb on + strand, within DVU0380at 429.890 kb on + strand, within DVU0380at 429.890 kb on + strand, within DVU0380at 429.890 kb on + strand, within DVU0380at 429.991 kb on + strand, within DVU0380at 430.026 kb on + strand, within DVU0380at 430.082 kb on - strand, within DVU0380at 430.087 kb on - strand, within DVU0380at 430.115 kb on + strand, within DVU0380at 430.115 kb on + strand, within DVU0380at 430.123 kb on - strand, within DVU0380at 430.123 kb on - strand, within DVU0380at 430.123 kb on - strand, within DVU0380at 430.123 kb on - strand, within DVU0380at 430.123 kb on - strand, within DVU0380at 430.137 kb on + strand, within DVU0380at 430.137 kb on + strand, within DVU0380at 430.169 kb on - strand, within DVU0380at 430.298 kb on - strand, within DVU0380at 430.368 kb on - strand, within DVU0380at 430.417 kb on - strand, within DVU0380at 430.607 kb on + strand, within DVU0380at 430.624 kb on + strand, within DVU0380at 430.624 kb on + strand, within DVU0380at 430.632 kb on - strand, within DVU0380at 430.632 kb on - strand, within DVU0380at 430.636 kb on + strand, within DVU0380at 430.636 kb on + strand, within DVU0380at 430.636 kb on + strand, within DVU0380at 430.644 kb on - strand, within DVU0380at 430.644 kb on - strand, within DVU0380at 430.737 kb on - strand, within DVU0380at 430.761 kb on + strand, within DVU0380at 430.767 kb on + strand, within DVU0380at 430.769 kb on - strand, within DVU0380at 430.770 kb on - strand, within DVU0380at 430.777 kb on + strand, within DVU0380at 430.846 kb on + strand, within DVU0380at 430.854 kb on - strand, within DVU0380at 430.854 kb on - strand, within DVU0380at 431.014 kb on + strandat 431.109 kb on + strandat 431.112 kb on - strandat 431.162 kb on + strandat 431.198 kb on + strandat 431.207 kb on - strandat 431.291 kb on - strand, within nhaC-1at 431.296 kb on - strand, within nhaC-1at 431.299 kb on - strand, within nhaC-1at 431.340 kb on + strand, within nhaC-1at 431.340 kb on + strand, within nhaC-1at 431.466 kb on - strand, within nhaC-1at 431.468 kb on + strand, within nhaC-1at 431.483 kb on + strand, within nhaC-1at 431.551 kb on - strand, within nhaC-1at 431.607 kb on + strand, within nhaC-1at 431.645 kb on - strand, within nhaC-1at 431.670 kb on + strand, within nhaC-1at 431.670 kb on + strand, within nhaC-1at 431.670 kb on + strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.769 kb on - strand, within nhaC-1at 431.795 kb on + strand, within nhaC-1at 431.813 kb on + strand, within nhaC-1at 431.821 kb on - strand, within nhaC-1at 431.821 kb on - strand, within nhaC-1at 431.823 kb on + strand, within nhaC-1at 431.831 kb on - strand, within nhaC-1at 431.831 kb on - strand, within nhaC-1at 431.867 kb on + strand, within nhaC-1at 431.906 kb on + strand, within nhaC-1at 431.911 kb on + strand, within nhaC-1at 431.911 kb on + strand, within nhaC-1at 431.916 kb on + strand, within nhaC-1at 431.924 kb on - strand, within nhaC-1at 431.928 kb on + strand, within nhaC-1at 431.928 kb on + strand, within nhaC-1at 431.984 kb on + strand, within nhaC-1at 432.053 kb on + strand, within nhaC-1at 432.053 kb on + strand, within nhaC-1at 432.061 kb on - strand, within nhaC-1at 432.061 kb on - strand, within nhaC-1

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Malate 10mM
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428,568 + DVU0378 0.40 -0.3
428,568 + DVU0378 0.40 -0.2
428,651 + DVU0378 0.66 -0.4
428,664 + DVU0378 0.70 +0.1
428,786 - -0.2
428,940 + DVU0379 0.24 +0.7
428,949 + DVU0379 0.25 +1.1
428,957 - DVU0379 0.26 -0.1
429,022 - DVU0379 0.36 -0.3
429,077 - DVU0379 0.44 -0.9
429,227 - DVU0379 0.66 -0.4
429,272 - DVU0379 0.73 -0.6
429,317 + DVU0379 0.79 -1.3
429,402 - -1.6
429,411 - +0.0
429,500 + -0.1
429,628 + +0.1
429,671 - DVU0380 0.11 -0.8
429,859 + DVU0380 0.23 -1.4
429,890 + DVU0380 0.25 -0.2
429,890 + DVU0380 0.25 +0.2
429,890 + DVU0380 0.25 -1.1
429,890 + DVU0380 0.25 -0.7
429,890 + DVU0380 0.25 +0.6
429,890 + DVU0380 0.25 -3.0
429,991 + DVU0380 0.31 -0.4
430,026 + DVU0380 0.34 -0.4
430,082 - DVU0380 0.37 -0.2
430,087 - DVU0380 0.37 -0.6
430,115 + DVU0380 0.39 +0.2
430,115 + DVU0380 0.39 -0.3
430,123 - DVU0380 0.40 -0.5
430,123 - DVU0380 0.40 -0.0
430,123 - DVU0380 0.40 -1.3
430,123 - DVU0380 0.40 +0.1
430,123 - DVU0380 0.40 -0.9
430,137 + DVU0380 0.41 -0.6
430,137 + DVU0380 0.41 +0.0
430,169 - DVU0380 0.43 -1.9
430,298 - DVU0380 0.51 -1.1
430,368 - DVU0380 0.55 -0.7
430,417 - DVU0380 0.59 -0.9
430,607 + DVU0380 0.71 -0.7
430,624 + DVU0380 0.72 -0.1
430,624 + DVU0380 0.72 -0.1
430,632 - DVU0380 0.72 -1.0
430,632 - DVU0380 0.72 -0.8
430,636 + DVU0380 0.73 -1.0
430,636 + DVU0380 0.73 +0.4
430,636 + DVU0380 0.73 +0.2
430,644 - DVU0380 0.73 +0.1
430,644 - DVU0380 0.73 +0.2
430,737 - DVU0380 0.79 -0.4
430,761 + DVU0380 0.81 +0.3
430,767 + DVU0380 0.81 -1.3
430,769 - DVU0380 0.81 -1.5
430,770 - DVU0380 0.81 -0.1
430,777 + DVU0380 0.82 -1.1
430,846 + DVU0380 0.86 -1.7
430,854 - DVU0380 0.87 -0.0
430,854 - DVU0380 0.87 -0.6
431,014 + -1.4
431,109 + +0.1
431,112 - -0.1
431,162 + -1.9
431,198 + +0.1
431,207 - -0.6
431,291 - nhaC-1 DVU0381 0.13 -1.0
431,296 - nhaC-1 DVU0381 0.13 -0.5
431,299 - nhaC-1 DVU0381 0.14 -0.1
431,340 + nhaC-1 DVU0381 0.16 -0.6
431,340 + nhaC-1 DVU0381 0.16 -0.3
431,466 - nhaC-1 DVU0381 0.26 -0.1
431,468 + nhaC-1 DVU0381 0.26 +2.2
431,483 + nhaC-1 DVU0381 0.27 -0.1
431,551 - nhaC-1 DVU0381 0.32 +0.1
431,607 + nhaC-1 DVU0381 0.36 -0.2
431,645 - nhaC-1 DVU0381 0.38 -0.4
431,670 + nhaC-1 DVU0381 0.40 -0.4
431,670 + nhaC-1 DVU0381 0.40 -0.2
431,670 + nhaC-1 DVU0381 0.40 +0.2
431,678 - nhaC-1 DVU0381 0.41 -0.6
431,678 - nhaC-1 DVU0381 0.41 -0.2
431,678 - nhaC-1 DVU0381 0.41 -0.3
431,678 - nhaC-1 DVU0381 0.41 -0.2
431,769 - nhaC-1 DVU0381 0.47 +0.1
431,795 + nhaC-1 DVU0381 0.49 -1.7
431,813 + nhaC-1 DVU0381 0.50 +0.2
431,821 - nhaC-1 DVU0381 0.51 -0.9
431,821 - nhaC-1 DVU0381 0.51 -1.0
431,823 + nhaC-1 DVU0381 0.51 -0.3
431,831 - nhaC-1 DVU0381 0.52 -1.9
431,831 - nhaC-1 DVU0381 0.52 -1.1
431,867 + nhaC-1 DVU0381 0.54 -0.1
431,906 + nhaC-1 DVU0381 0.57 -1.1
431,911 + nhaC-1 DVU0381 0.57 +0.7
431,911 + nhaC-1 DVU0381 0.57 +0.9
431,916 + nhaC-1 DVU0381 0.58 +0.0
431,924 - nhaC-1 DVU0381 0.58 +1.5
431,928 + nhaC-1 DVU0381 0.59 -1.5
431,928 + nhaC-1 DVU0381 0.59 -1.2
431,984 + nhaC-1 DVU0381 0.63 +0.1
432,053 + nhaC-1 DVU0381 0.68 +0.2
432,053 + nhaC-1 DVU0381 0.68 -0.4
432,061 - nhaC-1 DVU0381 0.68 +0.0
432,061 - nhaC-1 DVU0381 0.68 -1.4

Or see this region's nucleotide sequence