Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23290 and BWI76_RS23295 are separated by 85 nucleotides BWI76_RS23295 and BWI76_RS23300 are separated by 124 nucleotides BWI76_RS23300 and BWI76_RS23305 are separated by 236 nucleotides
BWI76_RS23290: BWI76_RS23290 - DNA mismatch repair protein MutH, at 4,857,556 to 4,858,248
_RS23290
BWI76_RS23295: BWI76_RS23295 - tellurium resistance protein TerC, at 4,858,334 to 4,859,047
_RS23295
BWI76_RS23300: BWI76_RS23300 - YgdI/YgdR family lipoprotein, at 4,859,172 to 4,859,390
_RS23300
BWI76_RS23305: BWI76_RS23305 - NADP(H)-dependent aldo-keto reductase, at 4,859,627 to 4,860,667
_RS23305
Position (kb) 4859
4860 Strain fitness (log2 ratio) -2
-1
0
1 at 4858.282 kb on + strand at 4858.290 kb on - strand at 4858.365 kb on - strand at 4858.458 kb on - strand, within BWI76_RS23295 at 4858.487 kb on + strand, within BWI76_RS23295 at 4858.489 kb on + strand, within BWI76_RS23295 at 4858.525 kb on + strand, within BWI76_RS23295 at 4858.682 kb on + strand, within BWI76_RS23295 at 4858.760 kb on - strand, within BWI76_RS23295 at 4858.928 kb on + strand, within BWI76_RS23295 at 4858.975 kb on - strand, within BWI76_RS23295 at 4859.010 kb on + strand at 4859.146 kb on - strand at 4859.291 kb on - strand, within BWI76_RS23300 at 4859.296 kb on - strand, within BWI76_RS23300 at 4859.328 kb on + strand, within BWI76_RS23300 at 4859.336 kb on + strand, within BWI76_RS23300 at 4859.427 kb on + strand at 4859.485 kb on - strand at 4859.495 kb on + strand at 4859.503 kb on - strand at 4859.503 kb on - strand at 4859.513 kb on - strand at 4859.592 kb on + strand at 4859.592 kb on + strand at 4859.632 kb on + strand at 4859.642 kb on + strand at 4859.650 kb on - strand at 4859.665 kb on - strand at 4859.670 kb on + strand at 4859.678 kb on - strand at 4859.680 kb on + strand at 4859.731 kb on + strand at 4859.880 kb on + strand, within BWI76_RS23305 at 4860.275 kb on - strand, within BWI76_RS23305
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL remove 4,858,282 + +0.6 4,858,290 - +0.5 4,858,365 - -0.5 4,858,458 - BWI76_RS23295 0.17 +0.4 4,858,487 + BWI76_RS23295 0.21 -0.3 4,858,489 + BWI76_RS23295 0.22 +0.2 4,858,525 + BWI76_RS23295 0.27 +1.1 4,858,682 + BWI76_RS23295 0.49 +0.1 4,858,760 - BWI76_RS23295 0.60 +0.1 4,858,928 + BWI76_RS23295 0.83 +0.2 4,858,975 - BWI76_RS23295 0.90 -0.8 4,859,010 + +0.1 4,859,146 - +0.2 4,859,291 - BWI76_RS23300 0.54 +0.6 4,859,296 - BWI76_RS23300 0.57 -1.1 4,859,328 + BWI76_RS23300 0.71 +0.9 4,859,336 + BWI76_RS23300 0.75 +0.8 4,859,427 + -0.1 4,859,485 - -2.0 4,859,495 + -1.7 4,859,503 - -0.7 4,859,503 - -2.7 4,859,513 - +0.3 4,859,592 + +0.2 4,859,592 + +1.2 4,859,632 + +0.6 4,859,642 + -1.1 4,859,650 - -0.7 4,859,665 - +1.4 4,859,670 + +0.4 4,859,678 - -0.1 4,859,680 + -0.1 4,859,731 + -0.1 4,859,880 + BWI76_RS23305 0.24 +0.1 4,860,275 - BWI76_RS23305 0.62 +0.6
Or see this region's nucleotide sequence