Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04980 and BWI76_RS04985 are separated by 1 nucleotides BWI76_RS04985 and BWI76_RS04990 are separated by 93 nucleotides BWI76_RS04990 and BWI76_RS04995 are separated by 11 nucleotides
BWI76_RS04980: BWI76_RS04980 - hypothetical protein, at 1,045,254 to 1,046,507
_RS04980
BWI76_RS04985: BWI76_RS04985 - aspartate 1-decarboxylase, at 1,046,509 to 1,046,889
_RS04985
BWI76_RS04990: BWI76_RS04990 - pantoate--beta-alanine ligase, at 1,046,983 to 1,047,837
_RS04990
BWI76_RS04995: BWI76_RS04995 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,047,849 to 1,048,640
_RS04995
Position (kb) 1046
1047 Strain fitness (log2 ratio) -2
-1
0
1 at 1045.514 kb on - strand, within BWI76_RS04980 at 1045.691 kb on + strand, within BWI76_RS04980 at 1045.699 kb on - strand, within BWI76_RS04980 at 1045.904 kb on + strand, within BWI76_RS04980 at 1045.912 kb on - strand, within BWI76_RS04980 at 1045.912 kb on - strand, within BWI76_RS04980 at 1046.015 kb on + strand, within BWI76_RS04980 at 1046.017 kb on - strand, within BWI76_RS04980 at 1046.260 kb on - strand, within BWI76_RS04980 at 1046.501 kb on + strand at 1046.554 kb on + strand, within BWI76_RS04985 at 1046.657 kb on - strand, within BWI76_RS04985 at 1047.247 kb on - strand, within BWI76_RS04990 at 1047.249 kb on + strand, within BWI76_RS04990 at 1047.395 kb on + strand, within BWI76_RS04990 at 1047.479 kb on + strand, within BWI76_RS04990 at 1047.576 kb on - strand, within BWI76_RS04990 at 1047.700 kb on + strand, within BWI76_RS04990
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL remove 1,045,514 - BWI76_RS04980 0.21 +0.2 1,045,691 + BWI76_RS04980 0.35 -0.9 1,045,699 - BWI76_RS04980 0.35 -0.4 1,045,904 + BWI76_RS04980 0.52 -1.4 1,045,912 - BWI76_RS04980 0.52 +0.0 1,045,912 - BWI76_RS04980 0.52 -0.5 1,046,015 + BWI76_RS04980 0.61 -1.9 1,046,017 - BWI76_RS04980 0.61 -1.4 1,046,260 - BWI76_RS04980 0.80 +0.1 1,046,501 + +0.3 1,046,554 + BWI76_RS04985 0.12 +0.9 1,046,657 - BWI76_RS04985 0.39 +0.4 1,047,247 - BWI76_RS04990 0.31 +0.9 1,047,249 + BWI76_RS04990 0.31 -0.4 1,047,395 + BWI76_RS04990 0.48 -0.3 1,047,479 + BWI76_RS04990 0.58 +0.7 1,047,576 - BWI76_RS04990 0.69 +0.2 1,047,700 + BWI76_RS04990 0.84 -1.1
Or see this region's nucleotide sequence