Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24925 and BWI76_RS24930 are separated by 9 nucleotides BWI76_RS24930 and BWI76_RS24935 are separated by 207 nucleotides BWI76_RS24935 and BWI76_RS24940 are separated by 72 nucleotides BWI76_RS24940 and BWI76_RS24945 are separated by 128 nucleotides
BWI76_RS24925: BWI76_RS24925 - DnaA initiator-associating protein DiaA, at 5,193,886 to 5,194,476
_RS24925
BWI76_RS24930: BWI76_RS24930 - osmotically-inducible protein OsmY, at 5,194,486 to 5,195,061
_RS24930
BWI76_RS24935: BWI76_RS24935 - hypothetical protein, at 5,195,269 to 5,196,309
_RS24935
BWI76_RS24940: BWI76_RS24940 - hypothetical protein, at 5,196,382 to 5,197,029
_RS24940
BWI76_RS24945: BWI76_RS24945 - glutamine amidotransferase, at 5,197,158 to 5,197,676
_RS24945
Position (kb) 5195
5196
5197 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5194.314 kb on - strand, within BWI76_RS24925 at 5194.493 kb on - strand at 5194.610 kb on + strand, within BWI76_RS24930 at 5194.610 kb on + strand, within BWI76_RS24930 at 5194.722 kb on - strand, within BWI76_RS24930 at 5194.745 kb on - strand, within BWI76_RS24930 at 5194.847 kb on - strand, within BWI76_RS24930 at 5194.878 kb on + strand, within BWI76_RS24930 at 5194.901 kb on - strand, within BWI76_RS24930 at 5194.953 kb on + strand, within BWI76_RS24930 at 5194.961 kb on - strand, within BWI76_RS24930 at 5195.081 kb on + strand at 5195.393 kb on - strand, within BWI76_RS24935 at 5195.516 kb on + strand, within BWI76_RS24935 at 5195.516 kb on + strand, within BWI76_RS24935 at 5195.528 kb on + strand, within BWI76_RS24935 at 5195.803 kb on + strand, within BWI76_RS24935 at 5195.811 kb on - strand, within BWI76_RS24935 at 5195.857 kb on - strand, within BWI76_RS24935 at 5195.971 kb on - strand, within BWI76_RS24935 at 5195.994 kb on + strand, within BWI76_RS24935 at 5196.154 kb on - strand, within BWI76_RS24935 at 5196.290 kb on + strand at 5196.343 kb on + strand at 5196.503 kb on + strand, within BWI76_RS24940 at 5196.869 kb on + strand, within BWI76_RS24940 at 5196.877 kb on - strand, within BWI76_RS24940 at 5196.877 kb on - strand, within BWI76_RS24940 at 5197.147 kb on - strand at 5197.174 kb on - strand at 5197.206 kb on + strand at 5197.251 kb on - strand, within BWI76_RS24945
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 5,194,314 - BWI76_RS24925 0.72 -0.1 5,194,493 - +0.3 5,194,610 + BWI76_RS24930 0.22 -0.1 5,194,610 + BWI76_RS24930 0.22 -0.2 5,194,722 - BWI76_RS24930 0.41 -0.4 5,194,745 - BWI76_RS24930 0.45 +0.1 5,194,847 - BWI76_RS24930 0.63 +0.4 5,194,878 + BWI76_RS24930 0.68 -2.4 5,194,901 - BWI76_RS24930 0.72 -0.4 5,194,953 + BWI76_RS24930 0.81 -1.1 5,194,961 - BWI76_RS24930 0.82 -0.4 5,195,081 + +0.6 5,195,393 - BWI76_RS24935 0.12 +2.1 5,195,516 + BWI76_RS24935 0.24 +0.4 5,195,516 + BWI76_RS24935 0.24 +0.3 5,195,528 + BWI76_RS24935 0.25 -0.0 5,195,803 + BWI76_RS24935 0.51 +0.8 5,195,811 - BWI76_RS24935 0.52 +0.5 5,195,857 - BWI76_RS24935 0.56 +0.3 5,195,971 - BWI76_RS24935 0.67 -0.9 5,195,994 + BWI76_RS24935 0.70 +0.5 5,196,154 - BWI76_RS24935 0.85 +2.4 5,196,290 + -1.6 5,196,343 + +0.9 5,196,503 + BWI76_RS24940 0.19 -1.4 5,196,869 + BWI76_RS24940 0.75 -1.1 5,196,877 - BWI76_RS24940 0.76 +0.4 5,196,877 - BWI76_RS24940 0.76 -0.2 5,197,147 - -0.3 5,197,174 - +0.1 5,197,206 + +0.7 5,197,251 - BWI76_RS24945 0.18 +0.3
Or see this region's nucleotide sequence