Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13765 and BWI76_RS13770 are separated by 5 nucleotides BWI76_RS13770 and BWI76_RS13775 are separated by 9 nucleotides BWI76_RS13775 and BWI76_RS13780 overlap by 4 nucleotides
BWI76_RS13765: BWI76_RS13765 - MFS transporter AraJ, at 2,869,840 to 2,870,991
_RS13765
BWI76_RS13770: BWI76_RS13770 - alkylhydroperoxidase domain protein, at 2,870,997 to 2,872,088
_RS13770
BWI76_RS13775: BWI76_RS13775 - putative FMN-dependent luciferase-like monooxygenase, at 2,872,098 to 2,873,087
_RS13775
BWI76_RS13780: BWI76_RS13780 - ABC transporter ATP-binding protein, at 2,873,084 to 2,874,688
_RS13780
Position (kb)
2870
2871
2872
2873 Strain fitness (log2 ratio)
-2
-1
0
1 at 2870.009 kb on + strand, within BWI76_RS13765 at 2870.014 kb on + strand, within BWI76_RS13765 at 2870.101 kb on + strand, within BWI76_RS13765 at 2870.288 kb on - strand, within BWI76_RS13765 at 2870.288 kb on - strand, within BWI76_RS13765 at 2870.342 kb on - strand, within BWI76_RS13765 at 2870.347 kb on + strand, within BWI76_RS13765 at 2870.352 kb on + strand, within BWI76_RS13765 at 2870.355 kb on - strand, within BWI76_RS13765 at 2870.355 kb on - strand, within BWI76_RS13765 at 2870.472 kb on - strand, within BWI76_RS13765 at 2870.501 kb on + strand, within BWI76_RS13765 at 2870.501 kb on - strand, within BWI76_RS13765 at 2870.700 kb on + strand, within BWI76_RS13765 at 2870.700 kb on + strand, within BWI76_RS13765 at 2870.708 kb on - strand, within BWI76_RS13765 at 2870.708 kb on - strand, within BWI76_RS13765 at 2870.708 kb on - strand, within BWI76_RS13765 at 2870.743 kb on + strand, within BWI76_RS13765 at 2870.765 kb on - strand, within BWI76_RS13765 at 2870.806 kb on + strand, within BWI76_RS13765 at 2870.906 kb on + strand at 2871.274 kb on + strand, within BWI76_RS13770 at 2871.753 kb on - strand, within BWI76_RS13770 at 2871.838 kb on + strand, within BWI76_RS13770 at 2871.993 kb on + strand at 2872.152 kb on + strand at 2872.166 kb on + strand at 2872.272 kb on - strand, within BWI76_RS13775 at 2872.532 kb on + strand, within BWI76_RS13775 at 2872.598 kb on - strand, within BWI76_RS13775
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 2,870,009 + BWI76_RS13765 0.15 -1.2 2,870,014 + BWI76_RS13765 0.15 -0.2 2,870,101 + BWI76_RS13765 0.23 +1.7 2,870,288 - BWI76_RS13765 0.39 +0.6 2,870,288 - BWI76_RS13765 0.39 +0.5 2,870,342 - BWI76_RS13765 0.44 -1.5 2,870,347 + BWI76_RS13765 0.44 -0.4 2,870,352 + BWI76_RS13765 0.44 -1.3 2,870,355 - BWI76_RS13765 0.45 -1.5 2,870,355 - BWI76_RS13765 0.45 -0.6 2,870,472 - BWI76_RS13765 0.55 +0.3 2,870,501 + BWI76_RS13765 0.57 +0.1 2,870,501 - BWI76_RS13765 0.57 +1.0 2,870,700 + BWI76_RS13765 0.75 -0.1 2,870,700 + BWI76_RS13765 0.75 +0.3 2,870,708 - BWI76_RS13765 0.75 +1.1 2,870,708 - BWI76_RS13765 0.75 +0.1 2,870,708 - BWI76_RS13765 0.75 -0.6 2,870,743 + BWI76_RS13765 0.78 +0.3 2,870,765 - BWI76_RS13765 0.80 +0.1 2,870,806 + BWI76_RS13765 0.84 +0.4 2,870,906 + +0.7 2,871,274 + BWI76_RS13770 0.25 +0.1 2,871,753 - BWI76_RS13770 0.69 -1.0 2,871,838 + BWI76_RS13770 0.77 -1.8 2,871,993 + -0.3 2,872,152 + +0.7 2,872,166 + +1.1 2,872,272 - BWI76_RS13775 0.18 -0.5 2,872,532 + BWI76_RS13775 0.44 -2.3 2,872,598 - BWI76_RS13775 0.51 -2.1
Or see this region's nucleotide sequence