Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07680 and BWI76_RS07685 overlap by 8 nucleotides BWI76_RS07685 and BWI76_RS07690 are separated by 53 nucleotides BWI76_RS07690 and BWI76_RS07695 are separated by 67 nucleotides
BWI76_RS07680: BWI76_RS07680 - transketolase, at 1,627,339 to 1,628,169
_RS07680
BWI76_RS07685: BWI76_RS07685 - transketolase, at 1,628,162 to 1,629,097
_RS07685
BWI76_RS07690: BWI76_RS07690 - enterochelin synthetase component D, at 1,629,151 to 1,629,774
_RS07690
BWI76_RS07695: BWI76_RS07695 - TonB-dependent siderophore receptor, at 1,629,842 to 1,632,091
_RS07695
Position (kb) 1629
1630 Strain fitness (log2 ratio) -1
0
1 at 1628.179 kb on + strand at 1628.630 kb on - strand, within BWI76_RS07685 at 1629.163 kb on + strand at 1629.281 kb on - strand, within BWI76_RS07690 at 1629.496 kb on + strand, within BWI76_RS07690 at 1629.507 kb on + strand, within BWI76_RS07690 at 1629.515 kb on - strand, within BWI76_RS07690 at 1629.542 kb on + strand, within BWI76_RS07690 at 1629.685 kb on - strand, within BWI76_RS07690 at 1630.091 kb on + strand, within BWI76_RS07695 at 1630.099 kb on - strand, within BWI76_RS07695 at 1630.143 kb on + strand, within BWI76_RS07695 at 1630.186 kb on + strand at 1630.189 kb on - strand, within BWI76_RS07695 at 1630.391 kb on + strand, within BWI76_RS07695 at 1630.574 kb on + strand, within BWI76_RS07695 at 1630.574 kb on + strand, within BWI76_RS07695 at 1630.582 kb on - strand, within BWI76_RS07695 at 1630.582 kb on - strand, within BWI76_RS07695 at 1630.611 kb on + strand, within BWI76_RS07695 at 1630.712 kb on - strand, within BWI76_RS07695
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 1,628,179 + +0.2 1,628,630 - BWI76_RS07685 0.50 +0.9 1,629,163 + -0.5 1,629,281 - BWI76_RS07690 0.21 +1.0 1,629,496 + BWI76_RS07690 0.55 +0.7 1,629,507 + BWI76_RS07690 0.57 +0.7 1,629,515 - BWI76_RS07690 0.58 +0.4 1,629,542 + BWI76_RS07690 0.63 +0.6 1,629,685 - BWI76_RS07690 0.86 +0.5 1,630,091 + BWI76_RS07695 0.11 -1.0 1,630,099 - BWI76_RS07695 0.11 -1.4 1,630,143 + BWI76_RS07695 0.13 -1.0 1,630,186 + -0.6 1,630,189 - BWI76_RS07695 0.15 -0.8 1,630,391 + BWI76_RS07695 0.24 -0.9 1,630,574 + BWI76_RS07695 0.33 -1.0 1,630,574 + BWI76_RS07695 0.33 +0.7 1,630,582 - BWI76_RS07695 0.33 +0.3 1,630,582 - BWI76_RS07695 0.33 +0.6 1,630,611 + BWI76_RS07695 0.34 -0.0 1,630,712 - BWI76_RS07695 0.39 -0.8
Or see this region's nucleotide sequence