Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03310

Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03305 and BWI76_RS03310 are separated by 24 nucleotidesBWI76_RS03310 and BWI76_RS03315 are separated by 186 nucleotides BWI76_RS03305: BWI76_RS03305 - hypothetical protein, at 681,094 to 682,334 _RS03305 BWI76_RS03310: BWI76_RS03310 - AraC family transcriptional regulator, at 682,359 to 682,946 _RS03310 BWI76_RS03315: BWI76_RS03315 - clavaldehyde dehydrogenase, at 683,133 to 683,900 _RS03315 Position (kb) 682 683Strain fitness (log2 ratio) -2 -1 0 1 2 3at 682.401 kb on - strandat 682.457 kb on + strand, within BWI76_RS03310at 682.462 kb on + strand, within BWI76_RS03310at 682.660 kb on + strand, within BWI76_RS03310at 682.744 kb on - strand, within BWI76_RS03310at 682.776 kb on + strand, within BWI76_RS03310at 682.943 kb on + strandat 683.035 kb on + strandat 683.180 kb on - strandat 683.424 kb on - strand, within BWI76_RS03315at 683.497 kb on + strandat 683.548 kb on + strand, within BWI76_RS03315at 683.554 kb on + strand, within BWI76_RS03315at 683.562 kb on - strand, within BWI76_RS03315at 683.562 kb on - strand, within BWI76_RS03315at 683.844 kb on + strandat 683.934 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
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682,401 - -0.0
682,457 + BWI76_RS03310 0.17 -0.9
682,462 + BWI76_RS03310 0.18 +1.3
682,660 + BWI76_RS03310 0.51 +3.5
682,744 - BWI76_RS03310 0.65 -0.6
682,776 + BWI76_RS03310 0.71 +1.2
682,943 + +0.6
683,035 + -0.0
683,180 - +0.1
683,424 - BWI76_RS03315 0.38 -0.2
683,497 + -1.0
683,548 + BWI76_RS03315 0.54 +0.3
683,554 + BWI76_RS03315 0.55 +0.2
683,562 - BWI76_RS03315 0.56 -0.8
683,562 - BWI76_RS03315 0.56 +0.0
683,844 + -0.5
683,934 + -2.6

Or see this region's nucleotide sequence