Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27885 and BWI76_RS27890 are separated by 341 nucleotides BWI76_RS27890 and BWI76_RS27895 overlap by 33 nucleotides
BWI76_RS27885: BWI76_RS27885 - PTS alpha-glucoside transporter subunit IICB, at 5,782,842 to 5,784,464
_RS27885
BWI76_RS27890: BWI76_RS27890 - GntR family transcriptional regulator, at 5,784,806 to 5,785,552
_RS27890
BWI76_RS27895: BWI76_RS27895 - transporter, at 5,785,520 to 5,787,181
_RS27895
Position (kb) 5784
5785
5786 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5783.828 kb on + strand, within BWI76_RS27885 at 5783.855 kb on - strand, within BWI76_RS27885 at 5783.855 kb on - strand, within BWI76_RS27885 at 5783.876 kb on - strand, within BWI76_RS27885 at 5783.884 kb on - strand, within BWI76_RS27885 at 5783.942 kb on - strand, within BWI76_RS27885 at 5784.000 kb on + strand, within BWI76_RS27885 at 5784.141 kb on + strand, within BWI76_RS27885 at 5784.218 kb on - strand, within BWI76_RS27885 at 5784.224 kb on - strand, within BWI76_RS27885 at 5784.301 kb on - strand, within BWI76_RS27885 at 5784.327 kb on + strand at 5784.379 kb on - strand at 5784.429 kb on - strand at 5784.486 kb on + strand at 5784.501 kb on + strand at 5784.501 kb on + strand at 5784.501 kb on + strand at 5784.501 kb on + strand at 5784.509 kb on - strand at 5784.542 kb on + strand at 5784.683 kb on - strand at 5784.699 kb on + strand at 5784.699 kb on + strand at 5784.699 kb on + strand at 5784.699 kb on + strand at 5784.699 kb on + strand at 5784.707 kb on - strand at 5784.707 kb on - strand at 5784.707 kb on - strand at 5784.707 kb on - strand at 5784.790 kb on + strand at 5784.866 kb on - strand at 5784.957 kb on + strand, within BWI76_RS27890 at 5785.018 kb on - strand, within BWI76_RS27890 at 5785.066 kb on + strand, within BWI76_RS27890 at 5785.096 kb on - strand, within BWI76_RS27890 at 5785.301 kb on + strand, within BWI76_RS27890 at 5785.399 kb on + strand, within BWI76_RS27890 at 5785.446 kb on + strand, within BWI76_RS27890 at 5785.538 kb on - strand at 5785.538 kb on - strand at 5785.947 kb on - strand, within BWI76_RS27895 at 5785.973 kb on + strand, within BWI76_RS27895 at 5785.976 kb on - strand, within BWI76_RS27895 at 5785.982 kb on - strand, within BWI76_RS27895 at 5786.020 kb on + strand, within BWI76_RS27895 at 5786.038 kb on + strand, within BWI76_RS27895 at 5786.205 kb on - strand, within BWI76_RS27895 at 5786.241 kb on - strand, within BWI76_RS27895 at 5786.423 kb on - strand, within BWI76_RS27895 at 5786.433 kb on - strand, within BWI76_RS27895 at 5786.466 kb on + strand, within BWI76_RS27895 at 5786.466 kb on + strand, within BWI76_RS27895 at 5786.466 kb on + strand, within BWI76_RS27895 at 5786.498 kb on + strand, within BWI76_RS27895
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 5,783,828 + BWI76_RS27885 0.61 -1.2 5,783,855 - BWI76_RS27885 0.62 -0.6 5,783,855 - BWI76_RS27885 0.62 -1.0 5,783,876 - BWI76_RS27885 0.64 +1.0 5,783,884 - BWI76_RS27885 0.64 -0.4 5,783,942 - BWI76_RS27885 0.68 -2.0 5,784,000 + BWI76_RS27885 0.71 -0.5 5,784,141 + BWI76_RS27885 0.80 +1.0 5,784,218 - BWI76_RS27885 0.85 +0.9 5,784,224 - BWI76_RS27885 0.85 -0.1 5,784,301 - BWI76_RS27885 0.90 -0.0 5,784,327 + +1.0 5,784,379 - +0.0 5,784,429 - +1.0 5,784,486 + +0.3 5,784,501 + -2.0 5,784,501 + -0.2 5,784,501 + +0.7 5,784,501 + +0.8 5,784,509 - -1.0 5,784,542 + +0.1 5,784,683 - -1.9 5,784,699 + -1.4 5,784,699 + +0.1 5,784,699 + -0.1 5,784,699 + +1.1 5,784,699 + +0.7 5,784,707 - -0.2 5,784,707 - +0.1 5,784,707 - +0.0 5,784,707 - +1.0 5,784,790 + +2.5 5,784,866 - +2.5 5,784,957 + BWI76_RS27890 0.20 +2.9 5,785,018 - BWI76_RS27890 0.28 +0.9 5,785,066 + BWI76_RS27890 0.35 +0.7 5,785,096 - BWI76_RS27890 0.39 +0.1 5,785,301 + BWI76_RS27890 0.66 -0.6 5,785,399 + BWI76_RS27890 0.79 -1.4 5,785,446 + BWI76_RS27890 0.86 +0.4 5,785,538 - +0.8 5,785,538 - -2.6 5,785,947 - BWI76_RS27895 0.26 +0.1 5,785,973 + BWI76_RS27895 0.27 +0.4 5,785,976 - BWI76_RS27895 0.27 -0.7 5,785,982 - BWI76_RS27895 0.28 -0.4 5,786,020 + BWI76_RS27895 0.30 +0.3 5,786,038 + BWI76_RS27895 0.31 +1.0 5,786,205 - BWI76_RS27895 0.41 -0.2 5,786,241 - BWI76_RS27895 0.43 -0.1 5,786,423 - BWI76_RS27895 0.54 +0.3 5,786,433 - BWI76_RS27895 0.55 -0.7 5,786,466 + BWI76_RS27895 0.57 -0.7 5,786,466 + BWI76_RS27895 0.57 -0.3 5,786,466 + BWI76_RS27895 0.57 +0.8 5,786,498 + BWI76_RS27895 0.59 -0.9
Or see this region's nucleotide sequence