Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24710 and BWI76_RS24715 are separated by 254 nucleotides BWI76_RS24715 and BWI76_RS24720 are separated by 15 nucleotides BWI76_RS24720 and BWI76_RS24725 are separated by 94 nucleotides
BWI76_RS24710: BWI76_RS24710 - membrane protein, at 5,152,864 to 5,153,832
_RS24710
BWI76_RS24715: BWI76_RS24715 - serine/threonine transporter SstT, at 5,154,087 to 5,155,334
_RS24715
BWI76_RS24720: BWI76_RS24720 - hypothetical protein, at 5,155,350 to 5,155,904
_RS24720
BWI76_RS24725: BWI76_RS24725 - altronate hydrolase, at 5,155,999 to 5,157,486
_RS24725
Position (kb) 5154
5155
5156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5153.196 kb on - strand, within BWI76_RS24710 at 5153.460 kb on + strand, within BWI76_RS24710 at 5153.461 kb on + strand, within BWI76_RS24710 at 5153.521 kb on + strand, within BWI76_RS24710 at 5153.587 kb on - strand, within BWI76_RS24710 at 5153.653 kb on + strand, within BWI76_RS24710 at 5153.769 kb on - strand at 5153.778 kb on + strand at 5153.778 kb on + strand at 5153.778 kb on + strand at 5153.841 kb on - strand at 5153.841 kb on - strand at 5153.855 kb on - strand at 5153.966 kb on - strand at 5153.975 kb on - strand at 5154.031 kb on - strand at 5154.063 kb on + strand at 5154.086 kb on - strand at 5154.086 kb on - strand at 5154.129 kb on + strand at 5154.137 kb on - strand at 5154.304 kb on + strand, within BWI76_RS24715 at 5154.824 kb on + strand, within BWI76_RS24715 at 5154.837 kb on + strand, within BWI76_RS24715 at 5155.006 kb on + strand, within BWI76_RS24715 at 5155.365 kb on + strand at 5155.632 kb on - strand, within BWI76_RS24720 at 5155.811 kb on + strand, within BWI76_RS24720 at 5155.886 kb on - strand at 5156.052 kb on + strand at 5156.054 kb on + strand at 5156.054 kb on + strand at 5156.088 kb on - strand at 5156.090 kb on - strand at 5156.278 kb on + strand, within BWI76_RS24725 at 5156.298 kb on - strand, within BWI76_RS24725 at 5156.325 kb on + strand, within BWI76_RS24725
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 5,153,196 - BWI76_RS24710 0.34 -0.1 5,153,460 + BWI76_RS24710 0.62 -0.2 5,153,461 + BWI76_RS24710 0.62 +0.5 5,153,521 + BWI76_RS24710 0.68 -1.6 5,153,587 - BWI76_RS24710 0.75 -0.6 5,153,653 + BWI76_RS24710 0.81 +0.4 5,153,769 - -0.0 5,153,778 + +0.1 5,153,778 + -0.5 5,153,778 + +0.8 5,153,841 - +0.1 5,153,841 - -0.1 5,153,855 - -0.1 5,153,966 - +0.4 5,153,975 - -0.4 5,154,031 - +1.0 5,154,063 + -0.1 5,154,086 - -0.0 5,154,086 - -0.3 5,154,129 + +1.0 5,154,137 - +0.2 5,154,304 + BWI76_RS24715 0.17 -3.2 5,154,824 + BWI76_RS24715 0.59 +0.2 5,154,837 + BWI76_RS24715 0.60 -0.3 5,155,006 + BWI76_RS24715 0.74 -1.7 5,155,365 + -0.0 5,155,632 - BWI76_RS24720 0.51 +0.7 5,155,811 + BWI76_RS24720 0.83 +2.6 5,155,886 - +0.1 5,156,052 + +0.7 5,156,054 + -0.3 5,156,054 + +1.5 5,156,088 - -0.2 5,156,090 - -2.2 5,156,278 + BWI76_RS24725 0.19 -0.4 5,156,298 - BWI76_RS24725 0.20 +0.5 5,156,325 + BWI76_RS24725 0.22 +0.9
Or see this region's nucleotide sequence