Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23610 and BWI76_RS23615 are separated by 9 nucleotides BWI76_RS23615 and BWI76_RS23620 overlap by 4 nucleotides
BWI76_RS23610: BWI76_RS23610 - multidrug transporter subunit MdtN, at 4,922,254 to 4,923,282
_RS23610
BWI76_RS23615: BWI76_RS23615 - multidrug transporter, at 4,923,292 to 4,925,235
_RS23615
BWI76_RS23620: BWI76_RS23620 - multidrug resistance transporter, at 4,925,232 to 4,926,710
_RS23620
Position (kb) 4923
4924
4925
4926 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4922.416 kb on - strand, within BWI76_RS23610 at 4922.484 kb on - strand, within BWI76_RS23610 at 4922.569 kb on - strand, within BWI76_RS23610 at 4922.773 kb on - strand, within BWI76_RS23610 at 4922.802 kb on - strand, within BWI76_RS23610 at 4922.893 kb on + strand, within BWI76_RS23610 at 4923.088 kb on - strand, within BWI76_RS23610 at 4923.307 kb on - strand at 4923.334 kb on + strand at 4923.374 kb on + strand at 4923.396 kb on + strand at 4923.408 kb on + strand at 4923.558 kb on - strand, within BWI76_RS23615 at 4923.605 kb on + strand, within BWI76_RS23615 at 4923.788 kb on + strand, within BWI76_RS23615 at 4923.859 kb on + strand, within BWI76_RS23615 at 4924.341 kb on + strand, within BWI76_RS23615 at 4924.520 kb on - strand, within BWI76_RS23615 at 4924.589 kb on + strand, within BWI76_RS23615 at 4924.682 kb on - strand, within BWI76_RS23615 at 4924.700 kb on + strand, within BWI76_RS23615 at 4924.717 kb on + strand, within BWI76_RS23615 at 4924.725 kb on - strand, within BWI76_RS23615 at 4924.802 kb on - strand, within BWI76_RS23615 at 4924.876 kb on + strand, within BWI76_RS23615 at 4924.909 kb on - strand, within BWI76_RS23615 at 4925.081 kb on + strand at 4925.393 kb on - strand, within BWI76_RS23620 at 4925.566 kb on - strand, within BWI76_RS23620 at 4925.596 kb on + strand, within BWI76_RS23620 at 4925.604 kb on - strand, within BWI76_RS23620 at 4925.802 kb on - strand, within BWI76_RS23620 at 4925.833 kb on - strand, within BWI76_RS23620 at 4925.894 kb on - strand, within BWI76_RS23620 at 4925.900 kb on + strand, within BWI76_RS23620 at 4925.901 kb on - strand, within BWI76_RS23620 at 4926.115 kb on + strand, within BWI76_RS23620 at 4926.115 kb on + strand, within BWI76_RS23620
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 4,922,416 - BWI76_RS23610 0.16 +0.6 4,922,484 - BWI76_RS23610 0.22 +0.3 4,922,569 - BWI76_RS23610 0.31 -0.5 4,922,773 - BWI76_RS23610 0.50 +0.5 4,922,802 - BWI76_RS23610 0.53 +0.4 4,922,893 + BWI76_RS23610 0.62 -0.5 4,923,088 - BWI76_RS23610 0.81 -2.0 4,923,307 - +0.2 4,923,334 + +0.8 4,923,374 + -0.5 4,923,396 + -1.8 4,923,408 + +0.2 4,923,558 - BWI76_RS23615 0.14 +0.7 4,923,605 + BWI76_RS23615 0.16 -0.1 4,923,788 + BWI76_RS23615 0.26 -0.1 4,923,859 + BWI76_RS23615 0.29 -0.5 4,924,341 + BWI76_RS23615 0.54 +1.6 4,924,520 - BWI76_RS23615 0.63 +0.6 4,924,589 + BWI76_RS23615 0.67 +0.4 4,924,682 - BWI76_RS23615 0.72 +0.9 4,924,700 + BWI76_RS23615 0.72 +0.4 4,924,717 + BWI76_RS23615 0.73 +2.0 4,924,725 - BWI76_RS23615 0.74 +0.4 4,924,802 - BWI76_RS23615 0.78 +0.5 4,924,876 + BWI76_RS23615 0.81 -0.3 4,924,909 - BWI76_RS23615 0.83 +0.8 4,925,081 + -1.4 4,925,393 - BWI76_RS23620 0.11 -1.1 4,925,566 - BWI76_RS23620 0.23 +0.5 4,925,596 + BWI76_RS23620 0.25 +0.4 4,925,604 - BWI76_RS23620 0.25 -0.4 4,925,802 - BWI76_RS23620 0.39 -1.6 4,925,833 - BWI76_RS23620 0.41 +0.4 4,925,894 - BWI76_RS23620 0.45 -0.3 4,925,900 + BWI76_RS23620 0.45 -0.2 4,925,901 - BWI76_RS23620 0.45 -0.0 4,926,115 + BWI76_RS23620 0.60 +0.7 4,926,115 + BWI76_RS23620 0.60 +0.4
Or see this region's nucleotide sequence