Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22915 and BWI76_RS22920 are separated by 559 nucleotides BWI76_RS22920 and BWI76_RS22925 are separated by 31 nucleotides
BWI76_RS22915: BWI76_RS22915 - L-fuculose phosphate aldolase (EC 4.1.2.17) <small>(from data)</small>, at 4,784,123 to 4,784,770
_RS22915
BWI76_RS22920: BWI76_RS22920 - MFS transporter, at 4,785,330 to 4,786,640
_RS22920
BWI76_RS22925: BWI76_RS22925 - L-fucose isomerase, at 4,786,672 to 4,788,447
_RS22925
Position (kb) 4785
4786
4787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4784.356 kb on + strand, within BWI76_RS22915 at 4784.409 kb on - strand, within BWI76_RS22915 at 4784.409 kb on - strand, within BWI76_RS22915 at 4784.419 kb on - strand, within BWI76_RS22915 at 4784.495 kb on + strand, within BWI76_RS22915 at 4784.512 kb on + strand at 4784.558 kb on + strand, within BWI76_RS22915 at 4784.605 kb on - strand, within BWI76_RS22915 at 4784.605 kb on - strand, within BWI76_RS22915 at 4784.624 kb on - strand, within BWI76_RS22915 at 4784.641 kb on + strand, within BWI76_RS22915 at 4784.651 kb on + strand, within BWI76_RS22915 at 4784.664 kb on - strand, within BWI76_RS22915 at 4784.664 kb on - strand, within BWI76_RS22915 at 4784.670 kb on - strand, within BWI76_RS22915 at 4784.684 kb on - strand, within BWI76_RS22915 at 4784.684 kb on - strand, within BWI76_RS22915 at 4784.691 kb on + strand, within BWI76_RS22915 at 4784.699 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.709 kb on - strand at 4784.709 kb on - strand at 4784.709 kb on - strand at 4784.709 kb on - strand at 4784.730 kb on - strand at 4784.730 kb on - strand at 4784.730 kb on - strand at 4784.730 kb on - strand at 4784.732 kb on + strand at 4784.740 kb on - strand at 4784.740 kb on - strand at 4784.740 kb on - strand at 4784.753 kb on - strand at 4784.762 kb on - strand at 4784.762 kb on - strand at 4784.762 kb on - strand at 4784.763 kb on - strand at 4784.763 kb on - strand at 4784.763 kb on - strand at 4784.767 kb on - strand at 4784.794 kb on - strand at 4784.827 kb on - strand at 4784.835 kb on + strand at 4784.835 kb on + strand at 4784.837 kb on + strand at 4784.843 kb on - strand at 4784.866 kb on - strand at 4784.887 kb on - strand at 4784.905 kb on + strand at 4784.905 kb on + strand at 4784.910 kb on + strand at 4784.910 kb on + strand at 4784.913 kb on - strand at 4784.913 kb on - strand at 4785.026 kb on - strand at 4785.149 kb on + strand at 4785.155 kb on + strand at 4785.230 kb on + strand at 4785.236 kb on - strand at 4785.248 kb on - strand at 4785.256 kb on + strand at 4785.265 kb on + strand at 4785.284 kb on + strand at 4785.285 kb on + strand at 4785.285 kb on + strand at 4785.285 kb on + strand at 4785.292 kb on - strand at 4785.293 kb on - strand at 4785.293 kb on - strand at 4785.308 kb on + strand at 4785.308 kb on + strand at 4785.308 kb on + strand at 4785.316 kb on - strand at 4785.316 kb on - strand at 4785.343 kb on - strand at 4785.368 kb on + strand at 4785.386 kb on - strand at 4785.394 kb on + strand at 4785.397 kb on - strand at 4785.397 kb on - strand at 4785.397 kb on - strand at 4785.402 kb on - strand at 4785.404 kb on - strand at 4785.410 kb on - strand at 4785.411 kb on - strand at 4785.416 kb on - strand at 4785.416 kb on - strand at 4785.416 kb on - strand at 4785.416 kb on - strand at 4785.416 kb on - strand at 4785.416 kb on - strand at 4785.421 kb on - strand at 4785.421 kb on - strand at 4785.495 kb on - strand, within BWI76_RS22920 at 4785.495 kb on - strand, within BWI76_RS22920 at 4785.495 kb on - strand, within BWI76_RS22920 at 4785.518 kb on + strand, within BWI76_RS22920 at 4785.561 kb on - strand, within BWI76_RS22920 at 4785.617 kb on + strand, within BWI76_RS22920 at 4785.617 kb on + strand, within BWI76_RS22920 at 4785.617 kb on + strand, within BWI76_RS22920 at 4785.620 kb on - strand, within BWI76_RS22920 at 4785.639 kb on + strand, within BWI76_RS22920 at 4785.639 kb on + strand, within BWI76_RS22920 at 4785.644 kb on + strand, within BWI76_RS22920 at 4785.644 kb on + strand, within BWI76_RS22920 at 4785.644 kb on + strand, within BWI76_RS22920 at 4785.644 kb on + strand, within BWI76_RS22920 at 4785.644 kb on + strand, within BWI76_RS22920 at 4785.644 kb on + strand, within BWI76_RS22920 at 4785.644 kb on + strand, within BWI76_RS22920 at 4785.644 kb on + strand, within BWI76_RS22920 at 4785.644 kb on + strand, within BWI76_RS22920 at 4785.647 kb on - strand, within BWI76_RS22920 at 4785.647 kb on - strand, within BWI76_RS22920 at 4785.652 kb on - strand at 4785.652 kb on - strand, within BWI76_RS22920 at 4785.652 kb on - strand, within BWI76_RS22920 at 4785.652 kb on - strand, within BWI76_RS22920 at 4785.652 kb on - strand, within BWI76_RS22920 at 4785.652 kb on - strand, within BWI76_RS22920 at 4785.652 kb on - strand, within BWI76_RS22920 at 4785.655 kb on + strand, within BWI76_RS22920 at 4785.663 kb on + strand, within BWI76_RS22920 at 4785.671 kb on - strand at 4785.676 kb on + strand, within BWI76_RS22920 at 4785.676 kb on - strand, within BWI76_RS22920 at 4785.695 kb on + strand, within BWI76_RS22920 at 4785.695 kb on + strand, within BWI76_RS22920 at 4785.703 kb on - strand, within BWI76_RS22920 at 4785.703 kb on - strand, within BWI76_RS22920 at 4785.711 kb on + strand, within BWI76_RS22920 at 4785.711 kb on + strand, within BWI76_RS22920 at 4785.711 kb on + strand, within BWI76_RS22920 at 4785.711 kb on + strand, within BWI76_RS22920 at 4785.711 kb on + strand, within BWI76_RS22920 at 4785.711 kb on + strand, within BWI76_RS22920 at 4785.711 kb on + strand, within BWI76_RS22920 at 4785.719 kb on - strand, within BWI76_RS22920 at 4785.719 kb on - strand, within BWI76_RS22920 at 4785.719 kb on - strand, within BWI76_RS22920 at 4785.719 kb on - strand, within BWI76_RS22920 at 4785.719 kb on - strand, within BWI76_RS22920 at 4785.779 kb on + strand, within BWI76_RS22920 at 4785.779 kb on + strand, within BWI76_RS22920 at 4785.779 kb on + strand, within BWI76_RS22920 at 4785.784 kb on + strand, within BWI76_RS22920 at 4785.784 kb on + strand, within BWI76_RS22920 at 4785.784 kb on + strand, within BWI76_RS22920 at 4785.785 kb on + strand, within BWI76_RS22920 at 4785.795 kb on + strand, within BWI76_RS22920 at 4785.802 kb on + strand, within BWI76_RS22920 at 4785.802 kb on + strand, within BWI76_RS22920 at 4785.804 kb on + strand, within BWI76_RS22920 at 4785.810 kb on - strand, within BWI76_RS22920 at 4785.819 kb on - strand, within BWI76_RS22920 at 4785.847 kb on + strand, within BWI76_RS22920 at 4785.847 kb on + strand, within BWI76_RS22920 at 4785.847 kb on + strand, within BWI76_RS22920 at 4785.847 kb on + strand, within BWI76_RS22920 at 4785.847 kb on + strand, within BWI76_RS22920 at 4785.855 kb on - strand, within BWI76_RS22920 at 4785.855 kb on - strand, within BWI76_RS22920 at 4785.856 kb on + strand, within BWI76_RS22920 at 4785.892 kb on + strand, within BWI76_RS22920 at 4785.901 kb on + strand, within BWI76_RS22920 at 4785.901 kb on + strand, within BWI76_RS22920 at 4785.909 kb on - strand, within BWI76_RS22920 at 4785.911 kb on + strand, within BWI76_RS22920 at 4785.911 kb on + strand, within BWI76_RS22920 at 4785.911 kb on + strand, within BWI76_RS22920 at 4785.911 kb on + strand, within BWI76_RS22920 at 4785.911 kb on + strand, within BWI76_RS22920 at 4785.919 kb on - strand, within BWI76_RS22920 at 4785.919 kb on - strand, within BWI76_RS22920 at 4785.919 kb on - strand, within BWI76_RS22920 at 4785.920 kb on - strand, within BWI76_RS22920 at 4785.921 kb on + strand, within BWI76_RS22920 at 4785.926 kb on + strand, within BWI76_RS22920 at 4785.926 kb on + strand, within BWI76_RS22920 at 4785.926 kb on + strand, within BWI76_RS22920 at 4785.931 kb on + strand, within BWI76_RS22920 at 4785.931 kb on + strand, within BWI76_RS22920 at 4785.935 kb on + strand, within BWI76_RS22920 at 4785.962 kb on - strand, within BWI76_RS22920 at 4785.978 kb on + strand, within BWI76_RS22920 at 4786.053 kb on - strand, within BWI76_RS22920 at 4786.113 kb on + strand, within BWI76_RS22920 at 4786.124 kb on + strand, within BWI76_RS22920 at 4786.132 kb on - strand, within BWI76_RS22920 at 4786.323 kb on - strand, within BWI76_RS22920 at 4786.514 kb on - strand at 4786.524 kb on - strand at 4786.759 kb on + strand at 4786.820 kb on - strand at 4786.948 kb on - strand, within BWI76_RS22925 at 4787.415 kb on + strand, within BWI76_RS22925 at 4787.423 kb on - strand, within BWI76_RS22925 at 4787.439 kb on - strand, within BWI76_RS22925 at 4787.633 kb on - strand, within BWI76_RS22925
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 4,784,356 + BWI76_RS22915 0.36 -0.9 4,784,409 - BWI76_RS22915 0.44 -0.1 4,784,409 - BWI76_RS22915 0.44 -0.8 4,784,419 - BWI76_RS22915 0.46 -0.2 4,784,495 + BWI76_RS22915 0.57 +1.1 4,784,512 + +0.9 4,784,558 + BWI76_RS22915 0.67 -1.5 4,784,605 - BWI76_RS22915 0.74 -0.4 4,784,605 - BWI76_RS22915 0.74 +0.2 4,784,624 - BWI76_RS22915 0.77 -1.7 4,784,641 + BWI76_RS22915 0.80 -0.8 4,784,651 + BWI76_RS22915 0.81 -1.8 4,784,664 - BWI76_RS22915 0.83 -2.1 4,784,664 - BWI76_RS22915 0.83 +0.3 4,784,670 - BWI76_RS22915 0.84 -0.9 4,784,684 - BWI76_RS22915 0.87 -0.5 4,784,684 - BWI76_RS22915 0.87 +0.4 4,784,691 + BWI76_RS22915 0.88 -1.8 4,784,699 - BWI76_RS22915 0.89 -0.8 4,784,704 - BWI76_RS22915 0.90 -0.4 4,784,704 - BWI76_RS22915 0.90 +0.6 4,784,704 - BWI76_RS22915 0.90 +1.5 4,784,704 - BWI76_RS22915 0.90 +1.3 4,784,704 - BWI76_RS22915 0.90 -0.3 4,784,704 - BWI76_RS22915 0.90 +0.1 4,784,709 - -2.1 4,784,709 - -0.5 4,784,709 - -0.6 4,784,709 - -1.2 4,784,730 - -0.7 4,784,730 - +0.1 4,784,730 - -2.0 4,784,730 - -0.9 4,784,732 + -2.8 4,784,740 - -0.8 4,784,740 - -0.1 4,784,740 - +0.0 4,784,753 - +2.5 4,784,762 - +0.8 4,784,762 - -1.3 4,784,762 - -0.1 4,784,763 - +1.6 4,784,763 - -1.7 4,784,763 - +0.9 4,784,767 - -1.4 4,784,794 - +0.9 4,784,827 - +0.5 4,784,835 + +0.9 4,784,835 + +0.9 4,784,837 + -0.1 4,784,843 - -0.1 4,784,866 - +0.9 4,784,887 - -2.2 4,784,905 + +0.9 4,784,905 + -0.9 4,784,910 + +0.3 4,784,910 + -1.2 4,784,913 - +0.8 4,784,913 - -2.8 4,785,026 - +0.1 4,785,149 + +0.9 4,785,155 + +1.1 4,785,230 + -0.1 4,785,236 - +0.2 4,785,248 - +0.3 4,785,256 + -1.7 4,785,265 + -1.7 4,785,284 + -2.5 4,785,285 + +0.9 4,785,285 + -0.7 4,785,285 + +0.9 4,785,292 - -2.4 4,785,293 - +0.1 4,785,293 - +0.0 4,785,308 + -1.7 4,785,308 + -0.1 4,785,308 + -1.1 4,785,316 - -1.1 4,785,316 - -0.1 4,785,343 - -0.1 4,785,368 + -1.1 4,785,386 - -0.9 4,785,394 + -1.4 4,785,397 - -0.7 4,785,397 - -0.1 4,785,397 - +1.3 4,785,402 - +1.3 4,785,404 - -0.1 4,785,410 - -1.4 4,785,411 - +2.4 4,785,416 - +0.9 4,785,416 - -0.7 4,785,416 - -0.1 4,785,416 - -1.7 4,785,416 - -0.7 4,785,416 - -0.1 4,785,421 - -1.8 4,785,421 - -0.5 4,785,495 - BWI76_RS22920 0.13 -1.8 4,785,495 - BWI76_RS22920 0.13 -1.1 4,785,495 - BWI76_RS22920 0.13 -1.1 4,785,518 + BWI76_RS22920 0.14 -0.1 4,785,561 - BWI76_RS22920 0.18 -1.9 4,785,617 + BWI76_RS22920 0.22 -0.1 4,785,617 + BWI76_RS22920 0.22 -0.7 4,785,617 + BWI76_RS22920 0.22 +0.9 4,785,620 - BWI76_RS22920 0.22 -1.4 4,785,639 + BWI76_RS22920 0.24 -2.3 4,785,639 + BWI76_RS22920 0.24 -0.7 4,785,644 + BWI76_RS22920 0.24 -1.7 4,785,644 + BWI76_RS22920 0.24 -0.7 4,785,644 + BWI76_RS22920 0.24 -2.7 4,785,644 + BWI76_RS22920 0.24 -1.7 4,785,644 + BWI76_RS22920 0.24 -2.4 4,785,644 + BWI76_RS22920 0.24 -1.1 4,785,644 + BWI76_RS22920 0.24 -0.1 4,785,644 + BWI76_RS22920 0.24 -1.2 4,785,644 + BWI76_RS22920 0.24 -1.7 4,785,647 - BWI76_RS22920 0.24 -0.1 4,785,647 - BWI76_RS22920 0.24 -1.1 4,785,652 - +0.9 4,785,652 - BWI76_RS22920 0.25 -0.7 4,785,652 - BWI76_RS22920 0.25 -0.1 4,785,652 - BWI76_RS22920 0.25 +1.9 4,785,652 - BWI76_RS22920 0.25 -0.1 4,785,652 - BWI76_RS22920 0.25 +0.7 4,785,652 - BWI76_RS22920 0.25 +0.0 4,785,655 + BWI76_RS22920 0.25 +0.7 4,785,663 + BWI76_RS22920 0.25 +0.2 4,785,671 - +0.9 4,785,676 + BWI76_RS22920 0.26 +3.7 4,785,676 - BWI76_RS22920 0.26 +0.9 4,785,695 + BWI76_RS22920 0.28 -0.7 4,785,695 + BWI76_RS22920 0.28 -0.7 4,785,703 - BWI76_RS22920 0.28 -0.2 4,785,703 - BWI76_RS22920 0.28 +0.2 4,785,711 + BWI76_RS22920 0.29 +0.3 4,785,711 + BWI76_RS22920 0.29 -1.4 4,785,711 + BWI76_RS22920 0.29 +3.5 4,785,711 + BWI76_RS22920 0.29 -0.4 4,785,711 + BWI76_RS22920 0.29 +2.5 4,785,711 + BWI76_RS22920 0.29 -0.1 4,785,711 + BWI76_RS22920 0.29 +1.3 4,785,719 - BWI76_RS22920 0.30 +0.9 4,785,719 - BWI76_RS22920 0.30 +0.3 4,785,719 - BWI76_RS22920 0.30 -1.4 4,785,719 - BWI76_RS22920 0.30 -0.3 4,785,719 - BWI76_RS22920 0.30 -1.1 4,785,779 + BWI76_RS22920 0.34 -1.7 4,785,779 + BWI76_RS22920 0.34 -0.7 4,785,779 + BWI76_RS22920 0.34 -2.5 4,785,784 + BWI76_RS22920 0.35 -0.5 4,785,784 + BWI76_RS22920 0.35 +0.9 4,785,784 + BWI76_RS22920 0.35 +0.2 4,785,785 + BWI76_RS22920 0.35 -1.7 4,785,795 + BWI76_RS22920 0.35 -1.7 4,785,802 + BWI76_RS22920 0.36 -1.9 4,785,802 + BWI76_RS22920 0.36 -0.1 4,785,804 + BWI76_RS22920 0.36 -0.6 4,785,810 - BWI76_RS22920 0.37 -0.1 4,785,819 - BWI76_RS22920 0.37 +1.7 4,785,847 + BWI76_RS22920 0.39 -0.1 4,785,847 + BWI76_RS22920 0.39 -2.7 4,785,847 + BWI76_RS22920 0.39 -1.2 4,785,847 + BWI76_RS22920 0.39 -2.4 4,785,847 + BWI76_RS22920 0.39 -1.0 4,785,855 - BWI76_RS22920 0.40 -0.1 4,785,855 - BWI76_RS22920 0.40 +0.4 4,785,856 + BWI76_RS22920 0.40 -0.9 4,785,892 + BWI76_RS22920 0.43 -1.7 4,785,901 + BWI76_RS22920 0.44 +0.2 4,785,901 + BWI76_RS22920 0.44 -1.1 4,785,909 - BWI76_RS22920 0.44 -0.7 4,785,911 + BWI76_RS22920 0.44 -1.1 4,785,911 + BWI76_RS22920 0.44 -1.8 4,785,911 + BWI76_RS22920 0.44 -1.4 4,785,911 + BWI76_RS22920 0.44 +0.9 4,785,911 + BWI76_RS22920 0.44 -0.7 4,785,919 - BWI76_RS22920 0.45 -0.7 4,785,919 - BWI76_RS22920 0.45 -0.5 4,785,919 - BWI76_RS22920 0.45 -1.1 4,785,920 - BWI76_RS22920 0.45 +0.9 4,785,921 + BWI76_RS22920 0.45 -0.5 4,785,926 + BWI76_RS22920 0.45 +0.2 4,785,926 + BWI76_RS22920 0.45 -1.3 4,785,926 + BWI76_RS22920 0.45 -1.4 4,785,931 + BWI76_RS22920 0.46 -0.1 4,785,931 + BWI76_RS22920 0.46 -0.7 4,785,935 + BWI76_RS22920 0.46 -2.1 4,785,962 - BWI76_RS22920 0.48 +0.0 4,785,978 + BWI76_RS22920 0.49 +0.3 4,786,053 - BWI76_RS22920 0.55 +0.5 4,786,113 + BWI76_RS22920 0.60 +0.3 4,786,124 + BWI76_RS22920 0.61 -0.7 4,786,132 - BWI76_RS22920 0.61 +1.1 4,786,323 - BWI76_RS22920 0.76 +0.2 4,786,514 - -0.1 4,786,524 - -1.2 4,786,759 + +0.9 4,786,820 - -0.4 4,786,948 - BWI76_RS22925 0.16 -0.8 4,787,415 + BWI76_RS22925 0.42 +0.9 4,787,423 - BWI76_RS22925 0.42 -0.7 4,787,439 - BWI76_RS22925 0.43 -0.2 4,787,633 - BWI76_RS22925 0.54 +0.9
Or see this region's nucleotide sequence