Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20705 and BWI76_RS20710 are separated by 219 nucleotides BWI76_RS20710 and BWI76_RS20715 are separated by 96 nucleotides BWI76_RS20715 and BWI76_RS20720 are separated by 63 nucleotides
BWI76_RS20705: BWI76_RS20705 - thiosulfate transporter subunit, at 4,330,659 to 4,331,675
_RS20705
BWI76_RS20710: BWI76_RS20710 - dyp-type peroxidase family protein, at 4,331,895 to 4,332,794
_RS20710
BWI76_RS20715: BWI76_RS20715 - RpoE-regulated lipoprotein, at 4,332,891 to 4,333,466
_RS20715
BWI76_RS20720: BWI76_RS20720 - hypothetical protein, at 4,333,530 to 4,333,979
_RS20720
Position (kb) 4331
4332
4333 Strain fitness (log2 ratio) -2
-1
0
1 at 4330.980 kb on + strand, within BWI76_RS20705 at 4331.072 kb on - strand, within BWI76_RS20705 at 4331.253 kb on + strand, within BWI76_RS20705 at 4331.340 kb on - strand, within BWI76_RS20705 at 4331.370 kb on - strand, within BWI76_RS20705 at 4331.440 kb on - strand, within BWI76_RS20705 at 4331.509 kb on + strand, within BWI76_RS20705 at 4331.586 kb on + strand at 4331.737 kb on + strand at 4331.874 kb on + strand at 4331.916 kb on - strand at 4332.025 kb on - strand at 4332.106 kb on + strand, within BWI76_RS20710 at 4332.157 kb on - strand, within BWI76_RS20710 at 4332.157 kb on - strand, within BWI76_RS20710 at 4332.245 kb on - strand, within BWI76_RS20710 at 4332.251 kb on + strand, within BWI76_RS20710 at 4332.392 kb on + strand, within BWI76_RS20710 at 4332.482 kb on - strand, within BWI76_RS20710 at 4333.346 kb on + strand, within BWI76_RS20715 at 4333.453 kb on - strand at 4333.570 kb on - strand at 4333.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 4,330,980 + BWI76_RS20705 0.32 -0.7 4,331,072 - BWI76_RS20705 0.41 -0.3 4,331,253 + BWI76_RS20705 0.58 -0.4 4,331,340 - BWI76_RS20705 0.67 +0.4 4,331,370 - BWI76_RS20705 0.70 -0.3 4,331,440 - BWI76_RS20705 0.77 +0.7 4,331,509 + BWI76_RS20705 0.84 -2.0 4,331,586 + -0.9 4,331,737 + +0.8 4,331,874 + -0.2 4,331,916 - -0.2 4,332,025 - -0.7 4,332,106 + BWI76_RS20710 0.23 +0.0 4,332,157 - BWI76_RS20710 0.29 +0.6 4,332,157 - BWI76_RS20710 0.29 -0.1 4,332,245 - BWI76_RS20710 0.39 -0.2 4,332,251 + BWI76_RS20710 0.40 +0.8 4,332,392 + BWI76_RS20710 0.55 +1.1 4,332,482 - BWI76_RS20710 0.65 +0.9 4,333,346 + BWI76_RS20715 0.79 +0.3 4,333,453 - -0.6 4,333,570 - +0.5 4,333,570 - +1.1
Or see this region's nucleotide sequence