Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18455

Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18450 and BWI76_RS18455 are separated by 446 nucleotidesBWI76_RS18455 and BWI76_RS18460 are separated by 93 nucleotidesBWI76_RS18460 and BWI76_RS18465 are separated by 100 nucleotides BWI76_RS18450: BWI76_RS18450 - hypothetical protein, at 3,827,829 to 3,829,286 _RS18450 BWI76_RS18455: BWI76_RS18455 - tRNA-Ser, at 3,829,733 to 3,829,822 _RS18455 BWI76_RS18460: BWI76_RS18460 - DgsA anti-repressor MtfA, at 3,829,916 to 3,830,713 _RS18460 BWI76_RS18465: BWI76_RS18465 - tRNA-Asn, at 3,830,814 to 3,830,889 _RS18465 Position (kb) 3829 3830Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3828.955 kb on - strand, within BWI76_RS18450at 3828.978 kb on + strand, within BWI76_RS18450at 3828.986 kb on - strand, within BWI76_RS18450at 3829.002 kb on + strand, within BWI76_RS18450at 3829.006 kb on + strand, within BWI76_RS18450at 3829.006 kb on + strandat 3829.006 kb on + strand, within BWI76_RS18450at 3829.014 kb on - strand, within BWI76_RS18450at 3829.014 kb on - strand, within BWI76_RS18450at 3829.071 kb on + strand, within BWI76_RS18450at 3829.124 kb on + strand, within BWI76_RS18450at 3829.124 kb on + strand, within BWI76_RS18450at 3829.124 kb on + strand, within BWI76_RS18450at 3829.124 kb on + strand, within BWI76_RS18450at 3829.134 kb on + strand, within BWI76_RS18450at 3829.139 kb on + strand, within BWI76_RS18450at 3829.142 kb on - strandat 3829.142 kb on - strandat 3829.142 kb on - strandat 3829.142 kb on - strandat 3829.149 kb on + strandat 3829.176 kb on + strandat 3829.210 kb on + strandat 3829.214 kb on + strandat 3829.215 kb on - strandat 3829.220 kb on + strandat 3829.222 kb on + strandat 3829.225 kb on + strandat 3829.228 kb on - strandat 3829.228 kb on - strandat 3829.233 kb on - strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.257 kb on + strandat 3829.259 kb on + strandat 3829.265 kb on - strandat 3829.265 kb on - strandat 3829.265 kb on - strandat 3829.265 kb on - strandat 3829.265 kb on - strandat 3829.265 kb on - strandat 3829.265 kb on - strandat 3829.265 kb on - strandat 3829.265 kb on - strandat 3829.265 kb on - strandat 3829.265 kb on - strandat 3829.270 kb on + strandat 3829.314 kb on + strandat 3829.315 kb on + strandat 3829.320 kb on - strandat 3829.325 kb on + strandat 3829.333 kb on - strandat 3829.333 kb on - strandat 3829.333 kb on - strandat 3829.348 kb on - strandat 3829.371 kb on + strandat 3829.373 kb on - strandat 3829.373 kb on - strandat 3829.391 kb on - strandat 3829.398 kb on + strandat 3829.417 kb on - strandat 3829.438 kb on - strandat 3829.478 kb on - strandat 3829.525 kb on - strandat 3829.537 kb on - strandat 3829.541 kb on + strandat 3829.553 kb on + strandat 3829.554 kb on - strandat 3829.561 kb on + strandat 3829.610 kb on - strandat 3829.677 kb on + strandat 3829.677 kb on + strandat 3829.765 kb on + strand, within BWI76_RS18455at 3829.836 kb on + strandat 3829.892 kb on + strandat 3829.900 kb on - strandat 3829.934 kb on - strandat 3830.033 kb on + strand, within BWI76_RS18460at 3830.091 kb on + strand, within BWI76_RS18460at 3830.099 kb on + strand, within BWI76_RS18460at 3830.188 kb on + strand, within BWI76_RS18460at 3830.188 kb on + strand, within BWI76_RS18460at 3830.278 kb on - strand, within BWI76_RS18460at 3830.315 kb on + strand, within BWI76_RS18460at 3830.425 kb on + strand, within BWI76_RS18460

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
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3,828,955 - BWI76_RS18450 0.77 +1.0
3,828,978 + BWI76_RS18450 0.79 +1.9
3,828,986 - BWI76_RS18450 0.79 -1.1
3,829,002 + BWI76_RS18450 0.80 -0.0
3,829,006 + BWI76_RS18450 0.81 +0.2
3,829,006 + -0.6
3,829,006 + BWI76_RS18450 0.81 -0.8
3,829,014 - BWI76_RS18450 0.81 -2.8
3,829,014 - BWI76_RS18450 0.81 +0.6
3,829,071 + BWI76_RS18450 0.85 -1.3
3,829,124 + BWI76_RS18450 0.89 +0.3
3,829,124 + BWI76_RS18450 0.89 +1.6
3,829,124 + BWI76_RS18450 0.89 -0.4
3,829,124 + BWI76_RS18450 0.89 +0.5
3,829,134 + BWI76_RS18450 0.90 +0.3
3,829,139 + BWI76_RS18450 0.90 +0.8
3,829,142 - -1.6
3,829,142 - -0.6
3,829,142 - -4.3
3,829,142 - -0.9
3,829,149 + -0.0
3,829,176 + +0.0
3,829,210 + +0.4
3,829,214 + +1.0
3,829,215 - +0.6
3,829,220 + -0.0
3,829,222 + +0.4
3,829,225 + -0.0
3,829,228 - -0.9
3,829,228 - +0.8
3,829,233 - -2.7
3,829,257 + -0.0
3,829,257 + -0.6
3,829,257 + +1.0
3,829,257 + +0.4
3,829,257 + -0.1
3,829,257 + +0.0
3,829,257 + -0.3
3,829,257 + -0.1
3,829,257 + -1.4
3,829,257 + -0.4
3,829,257 + -0.1
3,829,257 + +1.4
3,829,257 + +1.3
3,829,257 + +1.4
3,829,257 + -0.0
3,829,257 + -0.0
3,829,259 + -0.8
3,829,265 - +1.0
3,829,265 - -0.8
3,829,265 - -0.6
3,829,265 - -0.1
3,829,265 - +0.1
3,829,265 - -0.1
3,829,265 - +0.9
3,829,265 - -0.4
3,829,265 - -0.6
3,829,265 - -1.4
3,829,265 - -1.6
3,829,270 + -1.5
3,829,314 + +0.0
3,829,315 + -1.1
3,829,320 - +1.4
3,829,325 + -0.2
3,829,333 - -0.0
3,829,333 - -1.5
3,829,333 - -0.0
3,829,348 - -0.2
3,829,371 + +1.1
3,829,373 - +0.1
3,829,373 - -1.4
3,829,391 - -0.2
3,829,398 + -0.9
3,829,417 - -0.3
3,829,438 - +0.4
3,829,478 - -0.4
3,829,525 - +0.0
3,829,537 - -0.6
3,829,541 + -1.6
3,829,553 + +0.6
3,829,554 - +0.4
3,829,561 + +0.5
3,829,610 - +0.7
3,829,677 + -0.4
3,829,677 + -1.2
3,829,765 + BWI76_RS18455 0.36 -1.1
3,829,836 + +0.6
3,829,892 + -0.5
3,829,900 - -1.1
3,829,934 - +0.2
3,830,033 + BWI76_RS18460 0.15 -0.2
3,830,091 + BWI76_RS18460 0.22 +0.1
3,830,099 + BWI76_RS18460 0.23 +0.9
3,830,188 + BWI76_RS18460 0.34 +0.5
3,830,188 + BWI76_RS18460 0.34 +0.4
3,830,278 - BWI76_RS18460 0.45 +0.3
3,830,315 + BWI76_RS18460 0.50 -0.8
3,830,425 + BWI76_RS18460 0.64 +0.8

Or see this region's nucleotide sequence