Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07015

Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07010 and BWI76_RS07015 are separated by 107 nucleotidesBWI76_RS07015 and BWI76_RS07020 are separated by 175 nucleotides BWI76_RS07010: BWI76_RS07010 - allantoin permease, at 1,472,612 to 1,474,066 _RS07010 BWI76_RS07015: BWI76_RS07015 - cyclic amidohydrolase, at 1,474,174 to 1,475,535 _RS07015 BWI76_RS07020: BWI76_RS07020 - putative purine permease YbbY, at 1,475,711 to 1,477,021 _RS07020 Position (kb) 1474 1475 1476Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1473.177 kb on - strand, within BWI76_RS07010at 1473.177 kb on - strand, within BWI76_RS07010at 1473.183 kb on + strand, within BWI76_RS07010at 1473.183 kb on + strand, within BWI76_RS07010at 1473.216 kb on - strand, within BWI76_RS07010at 1473.231 kb on + strand, within BWI76_RS07010at 1473.231 kb on + strand, within BWI76_RS07010at 1473.234 kb on - strand, within BWI76_RS07010at 1473.239 kb on - strand, within BWI76_RS07010at 1473.239 kb on - strand, within BWI76_RS07010at 1473.242 kb on + strand, within BWI76_RS07010at 1473.249 kb on + strand, within BWI76_RS07010at 1473.250 kb on - strand, within BWI76_RS07010at 1473.341 kb on + strand, within BWI76_RS07010at 1473.376 kb on + strand, within BWI76_RS07010at 1473.387 kb on + strand, within BWI76_RS07010at 1473.398 kb on + strand, within BWI76_RS07010at 1473.405 kb on + strand, within BWI76_RS07010at 1473.405 kb on + strand, within BWI76_RS07010at 1473.405 kb on + strand, within BWI76_RS07010at 1473.407 kb on - strand, within BWI76_RS07010at 1473.413 kb on - strand, within BWI76_RS07010at 1473.442 kb on + strand, within BWI76_RS07010at 1473.442 kb on + strand, within BWI76_RS07010at 1473.443 kb on + strand, within BWI76_RS07010at 1473.473 kb on - strand, within BWI76_RS07010at 1473.492 kb on + strand, within BWI76_RS07010at 1473.500 kb on + strand, within BWI76_RS07010at 1473.500 kb on - strand, within BWI76_RS07010at 1473.500 kb on - strand, within BWI76_RS07010at 1473.508 kb on - strand, within BWI76_RS07010at 1473.517 kb on + strand, within BWI76_RS07010at 1473.526 kb on - strand, within BWI76_RS07010at 1473.526 kb on - strand, within BWI76_RS07010at 1473.532 kb on + strandat 1473.551 kb on + strand, within BWI76_RS07010at 1473.574 kb on + strand, within BWI76_RS07010at 1473.583 kb on - strand, within BWI76_RS07010at 1473.771 kb on + strand, within BWI76_RS07010at 1473.778 kb on + strand, within BWI76_RS07010at 1473.795 kb on + strand, within BWI76_RS07010at 1473.822 kb on + strand, within BWI76_RS07010at 1473.832 kb on + strand, within BWI76_RS07010at 1473.832 kb on + strand, within BWI76_RS07010at 1473.832 kb on + strand, within BWI76_RS07010at 1473.832 kb on + strand, within BWI76_RS07010at 1473.832 kb on + strand, within BWI76_RS07010at 1473.835 kb on + strand, within BWI76_RS07010at 1473.835 kb on + strand, within BWI76_RS07010at 1473.835 kb on + strand, within BWI76_RS07010at 1473.835 kb on + strand, within BWI76_RS07010at 1473.840 kb on - strand, within BWI76_RS07010at 1473.840 kb on - strand, within BWI76_RS07010at 1473.840 kb on - strand, within BWI76_RS07010at 1473.840 kb on - strand, within BWI76_RS07010at 1473.840 kb on - strand, within BWI76_RS07010at 1473.872 kb on + strand, within BWI76_RS07010at 1473.890 kb on + strand, within BWI76_RS07010at 1473.892 kb on + strand, within BWI76_RS07010at 1473.903 kb on + strand, within BWI76_RS07010at 1473.946 kb on + strandat 1473.946 kb on + strandat 1473.953 kb on + strandat 1473.954 kb on - strandat 1473.954 kb on - strandat 1473.967 kb on + strandat 1474.048 kb on + strandat 1474.063 kb on - strandat 1474.104 kb on - strandat 1474.113 kb on + strandat 1474.125 kb on + strandat 1474.125 kb on - strandat 1474.127 kb on - strandat 1474.127 kb on - strandat 1474.129 kb on + strandat 1474.129 kb on + strandat 1474.132 kb on + strandat 1474.137 kb on - strandat 1474.137 kb on - strandat 1474.139 kb on + strandat 1474.140 kb on + strandat 1474.140 kb on + strandat 1474.140 kb on + strandat 1474.147 kb on + strandat 1474.149 kb on + strandat 1474.149 kb on + strandat 1474.149 kb on + strandat 1474.155 kb on - strandat 1474.157 kb on - strandat 1474.160 kb on - strandat 1474.161 kb on - strandat 1474.167 kb on - strandat 1474.223 kb on + strandat 1474.238 kb on + strandat 1474.274 kb on + strandat 1474.289 kb on + strandat 1474.307 kb on - strandat 1474.307 kb on - strandat 1474.310 kb on + strandat 1474.310 kb on + strandat 1474.310 kb on + strandat 1474.310 kb on + strandat 1474.310 kb on + strandat 1474.318 kb on - strand, within BWI76_RS07015at 1474.318 kb on - strandat 1474.318 kb on - strand, within BWI76_RS07015at 1474.318 kb on - strand, within BWI76_RS07015at 1474.340 kb on - strand, within BWI76_RS07015at 1474.354 kb on - strand, within BWI76_RS07015at 1474.358 kb on + strand, within BWI76_RS07015at 1474.366 kb on - strand, within BWI76_RS07015at 1474.378 kb on - strand, within BWI76_RS07015at 1474.523 kb on - strand, within BWI76_RS07015at 1474.561 kb on + strand, within BWI76_RS07015at 1474.589 kb on + strand, within BWI76_RS07015at 1474.896 kb on - strand, within BWI76_RS07015at 1474.939 kb on + strand, within BWI76_RS07015at 1474.987 kb on + strand, within BWI76_RS07015at 1474.990 kb on - strand, within BWI76_RS07015at 1475.103 kb on - strand, within BWI76_RS07015at 1475.121 kb on + strand, within BWI76_RS07015at 1475.163 kb on + strand, within BWI76_RS07015at 1475.185 kb on + strand, within BWI76_RS07015at 1475.208 kb on - strand, within BWI76_RS07015at 1475.208 kb on - strand, within BWI76_RS07015at 1475.322 kb on - strand, within BWI76_RS07015at 1475.610 kb on + strandat 1475.654 kb on - strandat 1475.844 kb on + strand, within BWI76_RS07020at 1475.899 kb on + strand, within BWI76_RS07020at 1476.128 kb on - strand, within BWI76_RS07020at 1476.141 kb on - strand, within BWI76_RS07020at 1476.233 kb on - strand, within BWI76_RS07020at 1476.313 kb on - strand, within BWI76_RS07020at 1476.315 kb on - strand, within BWI76_RS07020at 1476.422 kb on + strand, within BWI76_RS07020at 1476.425 kb on - strand, within BWI76_RS07020at 1476.430 kb on - strandat 1476.435 kb on + strand, within BWI76_RS07020at 1476.443 kb on - strand, within BWI76_RS07020at 1476.443 kb on - strand, within BWI76_RS07020at 1476.443 kb on - strand, within BWI76_RS07020at 1476.457 kb on - strand, within BWI76_RS07020at 1476.516 kb on + strand, within BWI76_RS07020at 1476.518 kb on + strand, within BWI76_RS07020

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
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1,473,177 - BWI76_RS07010 0.39 -1.4
1,473,177 - BWI76_RS07010 0.39 +0.9
1,473,183 + BWI76_RS07010 0.39 -1.3
1,473,183 + BWI76_RS07010 0.39 -1.0
1,473,216 - BWI76_RS07010 0.42 -0.8
1,473,231 + BWI76_RS07010 0.43 -0.2
1,473,231 + BWI76_RS07010 0.43 +2.1
1,473,234 - BWI76_RS07010 0.43 -0.5
1,473,239 - BWI76_RS07010 0.43 +0.1
1,473,239 - BWI76_RS07010 0.43 -1.0
1,473,242 + BWI76_RS07010 0.43 -1.8
1,473,249 + BWI76_RS07010 0.44 -0.4
1,473,250 - BWI76_RS07010 0.44 -2.6
1,473,341 + BWI76_RS07010 0.50 +0.1
1,473,376 + BWI76_RS07010 0.53 +1.5
1,473,387 + BWI76_RS07010 0.53 -0.2
1,473,398 + BWI76_RS07010 0.54 -1.4
1,473,405 + BWI76_RS07010 0.55 -0.9
1,473,405 + BWI76_RS07010 0.55 -1.4
1,473,405 + BWI76_RS07010 0.55 +0.5
1,473,407 - BWI76_RS07010 0.55 -1.0
1,473,413 - BWI76_RS07010 0.55 -0.7
1,473,442 + BWI76_RS07010 0.57 -1.9
1,473,442 + BWI76_RS07010 0.57 +0.2
1,473,443 + BWI76_RS07010 0.57 -1.6
1,473,473 - BWI76_RS07010 0.59 -1.9
1,473,492 + BWI76_RS07010 0.60 -0.7
1,473,500 + BWI76_RS07010 0.61 -0.9
1,473,500 - BWI76_RS07010 0.61 -2.6
1,473,500 - BWI76_RS07010 0.61 -1.9
1,473,508 - BWI76_RS07010 0.62 +0.4
1,473,517 + BWI76_RS07010 0.62 -1.2
1,473,526 - BWI76_RS07010 0.63 -1.9
1,473,526 - BWI76_RS07010 0.63 +0.9
1,473,532 + +0.9
1,473,551 + BWI76_RS07010 0.65 +0.5
1,473,574 + BWI76_RS07010 0.66 +0.1
1,473,583 - BWI76_RS07010 0.67 -0.5
1,473,771 + BWI76_RS07010 0.80 -0.4
1,473,778 + BWI76_RS07010 0.80 +0.9
1,473,795 + BWI76_RS07010 0.81 -1.3
1,473,822 + BWI76_RS07010 0.83 -1.9
1,473,832 + BWI76_RS07010 0.84 +0.6
1,473,832 + BWI76_RS07010 0.84 -2.9
1,473,832 + BWI76_RS07010 0.84 -0.3
1,473,832 + BWI76_RS07010 0.84 -1.4
1,473,832 + BWI76_RS07010 0.84 -0.6
1,473,835 + BWI76_RS07010 0.84 -0.7
1,473,835 + BWI76_RS07010 0.84 -1.2
1,473,835 + BWI76_RS07010 0.84 +4.4
1,473,835 + BWI76_RS07010 0.84 -0.5
1,473,840 - BWI76_RS07010 0.84 -3.0
1,473,840 - BWI76_RS07010 0.84 -1.6
1,473,840 - BWI76_RS07010 0.84 -1.7
1,473,840 - BWI76_RS07010 0.84 -0.1
1,473,840 - BWI76_RS07010 0.84 -0.4
1,473,872 + BWI76_RS07010 0.87 -0.5
1,473,890 + BWI76_RS07010 0.88 +0.9
1,473,892 + BWI76_RS07010 0.88 +0.7
1,473,903 + BWI76_RS07010 0.89 -0.6
1,473,946 + -1.0
1,473,946 + -0.7
1,473,953 + -0.6
1,473,954 - -0.1
1,473,954 - +0.9
1,473,967 + -0.4
1,474,048 + -0.7
1,474,063 - -1.9
1,474,104 - -0.1
1,474,113 + -0.2
1,474,125 + +1.9
1,474,125 - -1.3
1,474,127 - -1.6
1,474,127 - +0.9
1,474,129 + -0.9
1,474,129 + +0.1
1,474,132 + -1.5
1,474,137 - -0.6
1,474,137 - -1.1
1,474,139 + -2.1
1,474,140 + +0.5
1,474,140 + +0.3
1,474,140 + +0.7
1,474,147 + +0.9
1,474,149 + -1.5
1,474,149 + +0.8
1,474,149 + +1.0
1,474,155 - -1.1
1,474,157 - -2.2
1,474,160 - +0.1
1,474,161 - -2.0
1,474,167 - -0.5
1,474,223 + -0.6
1,474,238 + +0.9
1,474,274 + -0.4
1,474,289 + +0.1
1,474,307 - -0.1
1,474,307 - -0.6
1,474,310 + -0.4
1,474,310 + -0.0
1,474,310 + +0.2
1,474,310 + +0.0
1,474,310 + +0.3
1,474,318 - BWI76_RS07015 0.11 +0.1
1,474,318 - +0.6
1,474,318 - BWI76_RS07015 0.11 +0.9
1,474,318 - BWI76_RS07015 0.11 -1.7
1,474,340 - BWI76_RS07015 0.12 -0.1
1,474,354 - BWI76_RS07015 0.13 -0.7
1,474,358 + BWI76_RS07015 0.14 +0.6
1,474,366 - BWI76_RS07015 0.14 +0.7
1,474,378 - BWI76_RS07015 0.15 -3.1
1,474,523 - BWI76_RS07015 0.26 +0.6
1,474,561 + BWI76_RS07015 0.28 -1.0
1,474,589 + BWI76_RS07015 0.30 +0.2
1,474,896 - BWI76_RS07015 0.53 -1.5
1,474,939 + BWI76_RS07015 0.56 +0.4
1,474,987 + BWI76_RS07015 0.60 -0.7
1,474,990 - BWI76_RS07015 0.60 +0.5
1,475,103 - BWI76_RS07015 0.68 -1.4
1,475,121 + BWI76_RS07015 0.70 -2.7
1,475,163 + BWI76_RS07015 0.73 +0.1
1,475,185 + BWI76_RS07015 0.74 -0.5
1,475,208 - BWI76_RS07015 0.76 -2.5
1,475,208 - BWI76_RS07015 0.76 -0.9
1,475,322 - BWI76_RS07015 0.84 -0.5
1,475,610 + +0.8
1,475,654 - -0.3
1,475,844 + BWI76_RS07020 0.10 -1.9
1,475,899 + BWI76_RS07020 0.14 +1.3
1,476,128 - BWI76_RS07020 0.32 -2.3
1,476,141 - BWI76_RS07020 0.33 -0.1
1,476,233 - BWI76_RS07020 0.40 +0.1
1,476,313 - BWI76_RS07020 0.46 +0.3
1,476,315 - BWI76_RS07020 0.46 +0.3
1,476,422 + BWI76_RS07020 0.54 -0.6
1,476,425 - BWI76_RS07020 0.54 -0.6
1,476,430 - -1.1
1,476,435 + BWI76_RS07020 0.55 +1.6
1,476,443 - BWI76_RS07020 0.56 -0.1
1,476,443 - BWI76_RS07020 0.56 -0.3
1,476,443 - BWI76_RS07020 0.56 +1.0
1,476,457 - BWI76_RS07020 0.57 -1.3
1,476,516 + BWI76_RS07020 0.61 -0.8
1,476,518 + BWI76_RS07020 0.62 -1.3

Or see this region's nucleotide sequence