Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04355 and BWI76_RS04360 are separated by 65 nucleotides BWI76_RS04360 and BWI76_RS04365 are separated by 29 nucleotides
BWI76_RS04355: BWI76_RS04355 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 896,870 to 897,820
_RS04355
BWI76_RS04360: BWI76_RS04360 - ribonucleoside hydrolase RihC, at 897,886 to 898,800
_RS04360
BWI76_RS04365: BWI76_RS04365 - LysR family transcriptional regulator, at 898,830 to 899,768
_RS04365
Position (kb)
897
898
899 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 897.853 kb on + strand at 897.853 kb on + strand at 898.063 kb on - strand, within BWI76_RS04360 at 898.115 kb on - strand, within BWI76_RS04360 at 898.350 kb on + strand, within BWI76_RS04360 at 898.453 kb on - strand at 898.558 kb on + strand, within BWI76_RS04360 at 898.628 kb on + strand, within BWI76_RS04360 at 898.834 kb on - strand at 898.953 kb on + strand, within BWI76_RS04365 at 899.063 kb on - strand, within BWI76_RS04365 at 899.113 kb on - strand, within BWI76_RS04365 at 899.193 kb on + strand, within BWI76_RS04365 at 899.199 kb on + strand, within BWI76_RS04365 at 899.210 kb on - strand, within BWI76_RS04365 at 899.267 kb on - strand, within BWI76_RS04365 at 899.296 kb on - strand, within BWI76_RS04365 at 899.346 kb on + strand, within BWI76_RS04365 at 899.355 kb on - strand, within BWI76_RS04365 at 899.369 kb on - strand, within BWI76_RS04365 at 899.372 kb on + strand, within BWI76_RS04365 at 899.372 kb on + strand, within BWI76_RS04365 at 899.372 kb on + strand at 899.372 kb on + strand, within BWI76_RS04365 at 899.372 kb on + strand, within BWI76_RS04365 at 899.372 kb on + strand, within BWI76_RS04365 at 899.374 kb on + strand, within BWI76_RS04365 at 899.374 kb on + strand, within BWI76_RS04365 at 899.374 kb on + strand, within BWI76_RS04365 at 899.378 kb on - strand, within BWI76_RS04365 at 899.378 kb on - strand, within BWI76_RS04365 at 899.378 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.382 kb on - strand, within BWI76_RS04365 at 899.475 kb on + strand, within BWI76_RS04365 at 899.478 kb on - strand, within BWI76_RS04365 at 899.480 kb on + strand, within BWI76_RS04365 at 899.480 kb on + strand, within BWI76_RS04365 at 899.512 kb on + strand, within BWI76_RS04365 at 899.519 kb on + strand at 899.534 kb on + strand, within BWI76_RS04365 at 899.562 kb on - strand, within BWI76_RS04365 at 899.562 kb on - strand, within BWI76_RS04365 at 899.562 kb on - strand, within BWI76_RS04365 at 899.562 kb on - strand, within BWI76_RS04365 at 899.596 kb on - strand at 899.622 kb on - strand, within BWI76_RS04365 at 899.624 kb on + strand, within BWI76_RS04365 at 899.664 kb on + strand, within BWI76_RS04365 at 899.674 kb on + strand, within BWI76_RS04365 at 899.678 kb on + strand at 899.678 kb on + strand at 899.678 kb on + strand at 899.678 kb on + strand at 899.683 kb on + strand at 899.683 kb on + strand at 899.683 kb on + strand at 899.683 kb on + strand at 899.683 kb on + strand at 899.686 kb on - strand at 899.686 kb on - strand at 899.688 kb on + strand at 899.688 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.701 kb on + strand at 899.723 kb on + strand at 899.723 kb on - strand at 899.723 kb on - strand at 899.731 kb on - strand at 899.731 kb on - strand at 899.776 kb on + strand at 899.781 kb on - strand at 899.784 kb on - strand at 899.784 kb on - strand at 899.786 kb on - strand at 899.792 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 897,853 + -0.8 897,853 + -0.7 898,063 - BWI76_RS04360 0.19 -1.4 898,115 - BWI76_RS04360 0.25 -0.8 898,350 + BWI76_RS04360 0.51 -0.6 898,453 - +1.0 898,558 + BWI76_RS04360 0.73 -0.5 898,628 + BWI76_RS04360 0.81 -0.0 898,834 - +0.3 898,953 + BWI76_RS04365 0.13 -1.1 899,063 - BWI76_RS04365 0.25 -1.4 899,113 - BWI76_RS04365 0.30 -2.7 899,193 + BWI76_RS04365 0.39 +0.4 899,199 + BWI76_RS04365 0.39 -1.8 899,210 - BWI76_RS04365 0.40 +0.4 899,267 - BWI76_RS04365 0.47 -1.2 899,296 - BWI76_RS04365 0.50 +0.9 899,346 + BWI76_RS04365 0.55 +0.8 899,355 - BWI76_RS04365 0.56 +0.6 899,369 - BWI76_RS04365 0.57 -1.1 899,372 + BWI76_RS04365 0.58 -0.6 899,372 + BWI76_RS04365 0.58 +1.0 899,372 + +1.0 899,372 + BWI76_RS04365 0.58 -2.7 899,372 + BWI76_RS04365 0.58 -0.0 899,372 + BWI76_RS04365 0.58 -0.0 899,374 + BWI76_RS04365 0.58 -2.0 899,374 + BWI76_RS04365 0.58 -1.2 899,374 + BWI76_RS04365 0.58 -0.0 899,378 - BWI76_RS04365 0.58 -2.5 899,378 - BWI76_RS04365 0.58 -0.0 899,378 - BWI76_RS04365 0.58 -1.7 899,380 - BWI76_RS04365 0.59 -0.9 899,380 - BWI76_RS04365 0.59 -0.2 899,380 - BWI76_RS04365 0.59 -3.6 899,380 - BWI76_RS04365 0.59 +1.0 899,380 - BWI76_RS04365 0.59 -2.0 899,380 - BWI76_RS04365 0.59 -0.3 899,382 - BWI76_RS04365 0.59 +1.0 899,475 + BWI76_RS04365 0.69 +1.5 899,478 - BWI76_RS04365 0.69 -1.0 899,480 + BWI76_RS04365 0.69 +1.0 899,480 + BWI76_RS04365 0.69 -0.0 899,512 + BWI76_RS04365 0.73 -0.2 899,519 + -0.8 899,534 + BWI76_RS04365 0.75 -0.1 899,562 - BWI76_RS04365 0.78 -0.4 899,562 - BWI76_RS04365 0.78 +1.1 899,562 - BWI76_RS04365 0.78 -0.6 899,562 - BWI76_RS04365 0.78 -0.9 899,596 - +1.0 899,622 - BWI76_RS04365 0.84 -1.3 899,624 + BWI76_RS04365 0.85 -0.0 899,664 + BWI76_RS04365 0.89 -2.7 899,674 + BWI76_RS04365 0.90 -0.6 899,678 + -0.6 899,678 + +1.0 899,678 + +2.5 899,678 + -0.6 899,683 + +1.2 899,683 + -2.5 899,683 + -0.6 899,683 + +1.0 899,683 + -0.2 899,686 - +0.0 899,686 - -0.0 899,688 + -0.0 899,688 - -0.8 899,691 - +1.0 899,691 - -2.6 899,691 - -0.0 899,691 - -0.1 899,691 - -1.1 899,691 - -0.6 899,691 - +1.0 899,691 - +0.7 899,701 + -1.4 899,723 + +1.0 899,723 - -1.4 899,723 - -1.4 899,731 - +0.4 899,731 - -2.7 899,776 + -0.0 899,781 - +0.3 899,784 - -0.5 899,784 - -0.2 899,786 - -2.0 899,792 + -2.2
Or see this region's nucleotide sequence