Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS21225 and PFLU_RS31025 are separated by 330 nucleotides PFLU_RS31025 and PFLU_RS21235 are separated by 54 nucleotides
PFLU_RS21225: PFLU_RS21225 - SDR family oxidoreductase, at 4,775,593 to 4,776,408
_RS21225
PFLU_RS31025: PFLU_RS31025 - DUF3309 domain-containing protein, at 4,776,739 to 4,776,891
_RS31025
PFLU_RS21235: PFLU_RS21235 - LTA synthase family protein, at 4,776,946 to 4,779,033
_RS21235
Position (kb) 4776
4777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4775.747 kb on + strand, within PFLU_RS21225 at 4775.747 kb on + strand, within PFLU_RS21225 at 4775.747 kb on + strand, within PFLU_RS21225 at 4775.747 kb on + strand, within PFLU_RS21225 at 4775.747 kb on + strand, within PFLU_RS21225 at 4775.747 kb on + strand, within PFLU_RS21225 at 4775.747 kb on + strand, within PFLU_RS21225 at 4775.747 kb on + strand, within PFLU_RS21225 at 4775.747 kb on + strand, within PFLU_RS21225 at 4775.747 kb on + strand, within PFLU_RS21225 at 4775.747 kb on + strand, within PFLU_RS21225 at 4775.748 kb on - strand, within PFLU_RS21225 at 4775.748 kb on - strand, within PFLU_RS21225 at 4775.748 kb on - strand, within PFLU_RS21225 at 4775.748 kb on - strand, within PFLU_RS21225 at 4775.748 kb on - strand, within PFLU_RS21225 at 4775.748 kb on - strand, within PFLU_RS21225 at 4775.748 kb on - strand, within PFLU_RS21225 at 4775.748 kb on - strand, within PFLU_RS21225 at 4775.748 kb on - strand, within PFLU_RS21225 at 4775.748 kb on - strand, within PFLU_RS21225 at 4775.753 kb on + strand, within PFLU_RS21225 at 4775.753 kb on + strand, within PFLU_RS21225 at 4775.753 kb on + strand, within PFLU_RS21225 at 4775.753 kb on + strand, within PFLU_RS21225 at 4775.753 kb on + strand, within PFLU_RS21225 at 4775.753 kb on + strand, within PFLU_RS21225 at 4775.753 kb on + strand, within PFLU_RS21225 at 4775.753 kb on + strand, within PFLU_RS21225 at 4775.753 kb on + strand, within PFLU_RS21225 at 4775.753 kb on + strand, within PFLU_RS21225 at 4775.753 kb on + strand, within PFLU_RS21225 at 4775.754 kb on - strand, within PFLU_RS21225 at 4775.754 kb on - strand, within PFLU_RS21225 at 4775.754 kb on - strand, within PFLU_RS21225 at 4775.754 kb on - strand, within PFLU_RS21225 at 4775.754 kb on - strand, within PFLU_RS21225 at 4775.754 kb on - strand, within PFLU_RS21225 at 4775.960 kb on + strand, within PFLU_RS21225 at 4775.960 kb on + strand, within PFLU_RS21225 at 4775.960 kb on + strand, within PFLU_RS21225 at 4775.960 kb on + strand, within PFLU_RS21225 at 4775.960 kb on + strand, within PFLU_RS21225 at 4775.960 kb on + strand, within PFLU_RS21225 at 4775.960 kb on + strand, within PFLU_RS21225 at 4775.961 kb on - strand, within PFLU_RS21225 at 4775.961 kb on - strand, within PFLU_RS21225 at 4775.961 kb on - strand, within PFLU_RS21225 at 4775.961 kb on - strand, within PFLU_RS21225 at 4775.961 kb on - strand, within PFLU_RS21225 at 4775.961 kb on - strand, within PFLU_RS21225 at 4776.015 kb on + strand, within PFLU_RS21225 at 4776.015 kb on + strand, within PFLU_RS21225 at 4776.184 kb on + strand, within PFLU_RS21225 at 4776.222 kb on - strand, within PFLU_RS21225 at 4776.222 kb on - strand, within PFLU_RS21225 at 4776.409 kb on - strand at 4776.452 kb on - strand at 4776.452 kb on - strand at 4776.533 kb on + strand at 4776.534 kb on - strand at 4776.536 kb on - strand at 4776.536 kb on - strand at 4776.536 kb on - strand at 4776.540 kb on + strand at 4776.541 kb on - strand at 4776.541 kb on - strand at 4776.541 kb on - strand at 4776.560 kb on + strand at 4776.595 kb on + strand at 4776.596 kb on - strand at 4776.663 kb on - strand at 4776.691 kb on - strand at 4776.696 kb on + strand at 4776.697 kb on - strand at 4776.700 kb on + strand at 4776.759 kb on + strand, within PFLU_RS31025 at 4776.759 kb on + strand, within PFLU_RS31025 at 4776.759 kb on + strand, within PFLU_RS31025 at 4776.759 kb on + strand, within PFLU_RS31025 at 4776.759 kb on + strand, within PFLU_RS31025 at 4776.759 kb on + strand, within PFLU_RS31025 at 4776.760 kb on - strand, within PFLU_RS31025 at 4776.760 kb on - strand, within PFLU_RS31025 at 4776.760 kb on - strand, within PFLU_RS31025 at 4776.820 kb on + strand, within PFLU_RS31025 at 4776.849 kb on - strand, within PFLU_RS31025 at 4776.849 kb on - strand, within PFLU_RS31025 at 4776.849 kb on - strand, within PFLU_RS31025 at 4776.887 kb on + strand at 4776.887 kb on + strand at 4776.890 kb on - strand at 4776.890 kb on - strand at 4776.890 kb on - strand at 4776.918 kb on + strand at 4776.918 kb on + strand at 4776.919 kb on - strand at 4776.934 kb on - strand at 4776.947 kb on + strand at 4776.948 kb on - strand at 4777.094 kb on + strand at 4777.095 kb on - strand at 4777.135 kb on + strand at 4777.135 kb on + strand at 4777.135 kb on + strand at 4777.136 kb on - strand at 4777.311 kb on + strand, within PFLU_RS21235 at 4777.311 kb on + strand, within PFLU_RS21235 at 4777.311 kb on + strand, within PFLU_RS21235 at 4777.457 kb on + strand, within PFLU_RS21235 at 4777.457 kb on + strand, within PFLU_RS21235 at 4777.457 kb on + strand, within PFLU_RS21235 at 4777.458 kb on - strand, within PFLU_RS21235 at 4777.458 kb on - strand, within PFLU_RS21235 at 4777.587 kb on - strand, within PFLU_RS21235 at 4777.587 kb on - strand, within PFLU_RS21235 at 4777.622 kb on + strand, within PFLU_RS21235 at 4777.623 kb on - strand, within PFLU_RS21235 at 4777.623 kb on - strand, within PFLU_RS21235 at 4777.623 kb on - strand, within PFLU_RS21235 at 4777.623 kb on - strand, within PFLU_RS21235 at 4777.623 kb on - strand, within PFLU_RS21235 at 4777.623 kb on - strand, within PFLU_RS21235 at 4777.808 kb on + strand, within PFLU_RS21235 at 4777.808 kb on + strand, within PFLU_RS21235 at 4777.808 kb on + strand, within PFLU_RS21235 at 4777.809 kb on - strand, within PFLU_RS21235 at 4777.809 kb on - strand, within PFLU_RS21235 at 4777.809 kb on - strand, within PFLU_RS21235 at 4777.809 kb on - strand, within PFLU_RS21235 at 4777.809 kb on - strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.814 kb on + strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235 at 4777.815 kb on - strand, within PFLU_RS21235
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride remove 4,775,747 + PFLU_RS21225 0.19 -1.7 4,775,747 + PFLU_RS21225 0.19 +1.7 4,775,747 + PFLU_RS21225 0.19 -0.2 4,775,747 + PFLU_RS21225 0.19 -2.8 4,775,747 + PFLU_RS21225 0.19 -1.1 4,775,747 + PFLU_RS21225 0.19 -1.0 4,775,747 + PFLU_RS21225 0.19 +0.1 4,775,747 + PFLU_RS21225 0.19 -2.5 4,775,747 + PFLU_RS21225 0.19 +1.2 4,775,747 + PFLU_RS21225 0.19 -2.4 4,775,747 + PFLU_RS21225 0.19 +1.8 4,775,748 - PFLU_RS21225 0.19 +2.9 4,775,748 - PFLU_RS21225 0.19 -1.3 4,775,748 - PFLU_RS21225 0.19 +0.7 4,775,748 - PFLU_RS21225 0.19 +1.4 4,775,748 - PFLU_RS21225 0.19 -1.4 4,775,748 - PFLU_RS21225 0.19 -0.4 4,775,748 - PFLU_RS21225 0.19 -2.0 4,775,748 - PFLU_RS21225 0.19 +1.0 4,775,748 - PFLU_RS21225 0.19 -1.8 4,775,748 - PFLU_RS21225 0.19 +1.8 4,775,753 + PFLU_RS21225 0.20 -0.8 4,775,753 + PFLU_RS21225 0.20 -0.0 4,775,753 + PFLU_RS21225 0.20 +1.2 4,775,753 + PFLU_RS21225 0.20 +2.8 4,775,753 + PFLU_RS21225 0.20 -0.2 4,775,753 + PFLU_RS21225 0.20 +1.4 4,775,753 + PFLU_RS21225 0.20 +0.8 4,775,753 + PFLU_RS21225 0.20 +0.2 4,775,753 + PFLU_RS21225 0.20 -0.0 4,775,753 + PFLU_RS21225 0.20 -0.4 4,775,753 + PFLU_RS21225 0.20 +1.9 4,775,754 - PFLU_RS21225 0.20 -1.0 4,775,754 - PFLU_RS21225 0.20 +0.2 4,775,754 - PFLU_RS21225 0.20 -0.5 4,775,754 - PFLU_RS21225 0.20 +0.9 4,775,754 - PFLU_RS21225 0.20 -0.1 4,775,754 - PFLU_RS21225 0.20 +2.6 4,775,960 + PFLU_RS21225 0.45 -1.8 4,775,960 + PFLU_RS21225 0.45 -0.2 4,775,960 + PFLU_RS21225 0.45 +0.2 4,775,960 + PFLU_RS21225 0.45 -0.0 4,775,960 + PFLU_RS21225 0.45 +1.5 4,775,960 + PFLU_RS21225 0.45 +1.6 4,775,960 + PFLU_RS21225 0.45 -1.8 4,775,961 - PFLU_RS21225 0.45 +2.0 4,775,961 - PFLU_RS21225 0.45 +0.3 4,775,961 - PFLU_RS21225 0.45 -1.0 4,775,961 - PFLU_RS21225 0.45 +2.2 4,775,961 - PFLU_RS21225 0.45 -1.8 4,775,961 - PFLU_RS21225 0.45 +0.3 4,776,015 + PFLU_RS21225 0.52 -1.0 4,776,015 + PFLU_RS21225 0.52 -0.0 4,776,184 + PFLU_RS21225 0.72 -2.0 4,776,222 - PFLU_RS21225 0.77 +0.2 4,776,222 - PFLU_RS21225 0.77 +2.6 4,776,409 - -3.0 4,776,452 - +1.1 4,776,452 - +1.0 4,776,533 + +2.8 4,776,534 - -0.8 4,776,536 - -1.2 4,776,536 - +1.4 4,776,536 - +3.6 4,776,540 + -1.0 4,776,541 - -0.6 4,776,541 - +1.1 4,776,541 - -1.7 4,776,560 + +0.2 4,776,595 + -2.0 4,776,596 - -0.2 4,776,663 - -0.2 4,776,691 - +0.8 4,776,696 + -0.7 4,776,697 - +0.6 4,776,700 + -0.6 4,776,759 + PFLU_RS31025 0.13 -1.8 4,776,759 + PFLU_RS31025 0.13 -1.2 4,776,759 + PFLU_RS31025 0.13 -0.1 4,776,759 + PFLU_RS31025 0.13 +0.1 4,776,759 + PFLU_RS31025 0.13 -1.1 4,776,759 + PFLU_RS31025 0.13 -1.8 4,776,760 - PFLU_RS31025 0.14 -0.8 4,776,760 - PFLU_RS31025 0.14 -1.4 4,776,760 - PFLU_RS31025 0.14 -1.6 4,776,820 + PFLU_RS31025 0.53 -0.8 4,776,849 - PFLU_RS31025 0.72 -2.2 4,776,849 - PFLU_RS31025 0.72 -2.0 4,776,849 - PFLU_RS31025 0.72 -0.9 4,776,887 + +0.7 4,776,887 + +1.0 4,776,890 - +2.8 4,776,890 - -0.9 4,776,890 - +1.5 4,776,918 + -1.2 4,776,918 + -1.5 4,776,919 - -0.8 4,776,934 - -2.8 4,776,947 + +0.8 4,776,948 - -1.9 4,777,094 + +0.2 4,777,095 - -1.3 4,777,135 + -0.4 4,777,135 + +1.0 4,777,135 + -1.9 4,777,136 - +1.8 4,777,311 + PFLU_RS21235 0.17 +1.8 4,777,311 + PFLU_RS21235 0.17 +1.3 4,777,311 + PFLU_RS21235 0.17 -0.2 4,777,457 + PFLU_RS21235 0.24 +0.6 4,777,457 + PFLU_RS21235 0.24 -1.2 4,777,457 + PFLU_RS21235 0.24 +3.0 4,777,458 - PFLU_RS21235 0.25 +0.6 4,777,458 - PFLU_RS21235 0.25 -1.4 4,777,587 - PFLU_RS21235 0.31 +1.4 4,777,587 - PFLU_RS21235 0.31 +0.9 4,777,622 + PFLU_RS21235 0.32 +1.0 4,777,623 - PFLU_RS21235 0.32 -0.9 4,777,623 - PFLU_RS21235 0.32 -1.3 4,777,623 - PFLU_RS21235 0.32 +1.6 4,777,623 - PFLU_RS21235 0.32 +2.7 4,777,623 - PFLU_RS21235 0.32 -0.4 4,777,623 - PFLU_RS21235 0.32 +2.0 4,777,808 + PFLU_RS21235 0.41 +1.4 4,777,808 + PFLU_RS21235 0.41 +1.0 4,777,808 + PFLU_RS21235 0.41 -0.6 4,777,809 - PFLU_RS21235 0.41 +2.6 4,777,809 - PFLU_RS21235 0.41 +2.6 4,777,809 - PFLU_RS21235 0.41 +0.4 4,777,809 - PFLU_RS21235 0.41 +0.2 4,777,809 - PFLU_RS21235 0.41 +2.7 4,777,814 + PFLU_RS21235 0.42 -0.5 4,777,814 + PFLU_RS21235 0.42 -1.1 4,777,814 + PFLU_RS21235 0.42 -1.6 4,777,814 + PFLU_RS21235 0.42 +1.2 4,777,814 + PFLU_RS21235 0.42 -1.4 4,777,814 + PFLU_RS21235 0.42 -0.2 4,777,814 + PFLU_RS21235 0.42 +0.2 4,777,814 + PFLU_RS21235 0.42 +0.2 4,777,814 + PFLU_RS21235 0.42 +2.6 4,777,814 + PFLU_RS21235 0.42 -1.6 4,777,814 + PFLU_RS21235 0.42 -1.9 4,777,814 + PFLU_RS21235 0.42 +2.4 4,777,814 + PFLU_RS21235 0.42 -1.0 4,777,814 + PFLU_RS21235 0.42 -1.5 4,777,814 + PFLU_RS21235 0.42 -2.5 4,777,814 + PFLU_RS21235 0.42 +0.2 4,777,814 + PFLU_RS21235 0.42 +0.6 4,777,814 + PFLU_RS21235 0.42 +0.2 4,777,814 + PFLU_RS21235 0.42 +0.2 4,777,814 + PFLU_RS21235 0.42 -1.4 4,777,814 + PFLU_RS21235 0.42 +1.1 4,777,814 + PFLU_RS21235 0.42 -0.2 4,777,814 + PFLU_RS21235 0.42 +2.1 4,777,814 + PFLU_RS21235 0.42 +1.4 4,777,814 + PFLU_RS21235 0.42 -0.2 4,777,814 + PFLU_RS21235 0.42 +0.3 4,777,814 + PFLU_RS21235 0.42 -0.1 4,777,814 + PFLU_RS21235 0.42 -2.0 4,777,814 + PFLU_RS21235 0.42 -2.1 4,777,814 + PFLU_RS21235 0.42 +1.5 4,777,814 + PFLU_RS21235 0.42 +0.8 4,777,814 + PFLU_RS21235 0.42 +1.3 4,777,814 + PFLU_RS21235 0.42 -2.0 4,777,814 + PFLU_RS21235 0.42 -0.6 4,777,814 + PFLU_RS21235 0.42 -0.0 4,777,814 + PFLU_RS21235 0.42 +1.4 4,777,814 + PFLU_RS21235 0.42 +0.6 4,777,815 - PFLU_RS21235 0.42 -1.2 4,777,815 - PFLU_RS21235 0.42 -1.1 4,777,815 - PFLU_RS21235 0.42 +2.7 4,777,815 - PFLU_RS21235 0.42 -2.1 4,777,815 - PFLU_RS21235 0.42 -0.0 4,777,815 - PFLU_RS21235 0.42 -1.6 4,777,815 - PFLU_RS21235 0.42 +0.2 4,777,815 - PFLU_RS21235 0.42 -1.5 4,777,815 - PFLU_RS21235 0.42 +0.4 4,777,815 - PFLU_RS21235 0.42 -2.1 4,777,815 - PFLU_RS21235 0.42 +0.2 4,777,815 - PFLU_RS21235 0.42 +1.6 4,777,815 - PFLU_RS21235 0.42 +1.5 4,777,815 - PFLU_RS21235 0.42 -1.1 4,777,815 - PFLU_RS21235 0.42 +0.5 4,777,815 - PFLU_RS21235 0.42 -1.7 4,777,815 - PFLU_RS21235 0.42 -0.2 4,777,815 - PFLU_RS21235 0.42 -0.2 4,777,815 - PFLU_RS21235 0.42 +6.6 4,777,815 - PFLU_RS21235 0.42 -0.9 4,777,815 - PFLU_RS21235 0.42 -1.6 4,777,815 - PFLU_RS21235 0.42 -2.4 4,777,815 - PFLU_RS21235 0.42 +0.7 4,777,815 - PFLU_RS21235 0.42 +1.6 4,777,815 - PFLU_RS21235 0.42 +0.3 4,777,815 - PFLU_RS21235 0.42 +1.7 4,777,815 - PFLU_RS21235 0.42 +1.4 4,777,815 - PFLU_RS21235 0.42 +0.1 4,777,815 - PFLU_RS21235 0.42 -0.4
Or see this region's nucleotide sequence