Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14435

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
3,233,237	+		PFLU_RS14425	0.55	-0.0
3,233,237	+		PFLU_RS14425	0.55	+0.4
3,233,303	+		PFLU_RS14425	0.64	+1.3
3,233,303	+		PFLU_RS14425	0.64	-2.3
3,233,303	+		PFLU_RS14425	0.64	+2.3
3,233,344	-		PFLU_RS14425	0.69	-2.2
3,233,344	-		PFLU_RS14425	0.69	-1.3
3,233,409	+		PFLU_RS14425	0.77	+1.3
3,233,409	+		PFLU_RS14425	0.77	+3.2
3,233,409	+		PFLU_RS14425	0.77	+2.3
3,233,409	+		PFLU_RS14425	0.77	+0.3
3,233,409	+		PFLU_RS14425	0.77	+1.3
3,233,410	-		PFLU_RS14425	0.77	-1.8
3,233,410	-		PFLU_RS14425	0.77	-1.6
3,233,410	-		PFLU_RS14425	0.77	-1.4
3,233,410	-		PFLU_RS14425	0.77	-0.1
3,233,410	-		PFLU_RS14425	0.77	-0.9
3,233,410	-		PFLU_RS14425	0.77	+1.4
3,233,410	-		PFLU_RS14425	0.77	+0.8
3,233,410	-		PFLU_RS14425	0.77	-0.2
3,233,410	-		PFLU_RS14425	0.77	+0.4
3,233,416	+		PFLU_RS14425	0.78	-0.3
3,233,417	-		PFLU_RS14425	0.78	-0.1
3,233,635	+				+1.5
3,233,833	+		PFLU_RS14430	0.42	+4.3
3,233,924	-		PFLU_RS14430	0.62	+2.0
3,233,924	-		PFLU_RS14430	0.62	+0.3
3,233,961	-		PFLU_RS14430	0.69	+1.4
3,234,045	+		PFLU_RS14430	0.87	+0.7
3,234,046	-		PFLU_RS14430	0.87	+2.5
3,234,046	-		PFLU_RS14430	0.87	-0.3
3,234,178	+				-1.2
3,234,179	-				+1.5
3,234,179	-				+1.9
3,234,197	+				+1.3
3,234,197	+				-0.7
3,234,197	+				-0.9
3,234,197	+				-1.3
3,234,198	-				-0.9
3,234,200	+				+3.0
3,234,237	+				+1.1
3,234,237	+				+1.2
3,234,237	+				+0.8
3,234,238	-				+0.7
3,234,238	-				-0.1
3,234,314	+		PFLU_RS14435	0.15	-1.5
3,234,314	+		PFLU_RS14435	0.15	-2.6
3,234,314	+		PFLU_RS14435	0.15	+2.8
3,234,314	+		PFLU_RS14435	0.15	+0.7
3,234,315	-		PFLU_RS14435	0.15	-0.5
3,234,458	+		PFLU_RS14435	0.26	-0.5
3,234,458	+		PFLU_RS14435	0.26	+1.3
3,234,459	-		PFLU_RS14435	0.27	+0.9
3,234,459	-		PFLU_RS14435	0.27	+2.2
3,234,459	-		PFLU_RS14435	0.27	+3.0
3,234,459	-		PFLU_RS14435	0.27	+0.3
3,234,459	-		PFLU_RS14435	0.27	+3.4
3,234,491	+		PFLU_RS14435	0.29	-0.5
3,234,491	+		PFLU_RS14435	0.29	-1.3
3,234,491	+		PFLU_RS14435	0.29	-1.2
3,234,492	-		PFLU_RS14435	0.29	+2.5
3,234,492	-		PFLU_RS14435	0.29	+0.5
3,234,521	+		PFLU_RS14435	0.31	+0.3
3,234,521	+		PFLU_RS14435	0.31	+0.8
3,234,521	+		PFLU_RS14435	0.31	+2.7
3,234,522	-		PFLU_RS14435	0.31	-1.3
3,234,522	-		PFLU_RS14435	0.31	+1.6
3,234,533	+		PFLU_RS14435	0.32	-0.1
3,234,533	+		PFLU_RS14435	0.32	-0.2
3,234,533	+		PFLU_RS14435	0.32	+0.7
3,234,533	+		PFLU_RS14435	0.32	+1.7
3,234,533	+		PFLU_RS14435	0.32	-1.2
3,234,533	+		PFLU_RS14435	0.32	+1.1
3,234,533	+		PFLU_RS14435	0.32	+1.4
3,234,534	-		PFLU_RS14435	0.32	-1.8
3,234,534	-		PFLU_RS14435	0.32	-2.0
3,234,534	-		PFLU_RS14435	0.32	+1.0
3,234,534	-		PFLU_RS14435	0.32	+0.1
3,234,553	+		PFLU_RS14435	0.34	-0.7
3,234,554	-		PFLU_RS14435	0.34	+1.0
3,234,785	+		PFLU_RS14435	0.52	-1.8
3,234,785	+		PFLU_RS14435	0.52	-1.1
3,234,785	+		PFLU_RS14435	0.52	+0.3
3,234,785	+		PFLU_RS14435	0.52	-1.3
3,234,786	-		PFLU_RS14435	0.52	+1.9
3,234,786	-		PFLU_RS14435	0.52	+2.3
3,234,786	-		PFLU_RS14435	0.52	-1.2
3,234,834	+		PFLU_RS14435	0.56	+3.3
3,234,834	+		PFLU_RS14435	0.56	-1.4
3,234,834	+		PFLU_RS14435	0.56	-0.1
3,234,834	+		PFLU_RS14435	0.56	-0.4
3,234,834	+		PFLU_RS14435	0.56	+1.1
3,234,835	-		PFLU_RS14435	0.56	+3.4
3,234,878	+		PFLU_RS14435	0.59	-0.3
3,234,878	+		PFLU_RS14435	0.59	-0.3
3,234,902	+		PFLU_RS14435	0.61	-0.7
3,234,902	+		PFLU_RS14435	0.61	-1.2
3,234,918	+		PFLU_RS14435	0.62	-0.5
3,234,919	-		PFLU_RS14435	0.62	-1.6
3,234,919	-		PFLU_RS14435	0.62	-0.1
3,235,110	+		PFLU_RS14435	0.77	+1.8
3,235,110	+		PFLU_RS14435	0.77	-0.7
3,235,110	+		PFLU_RS14435	0.77	-1.3
3,235,110	+		PFLU_RS14435	0.77	-0.7
3,235,110	+		PFLU_RS14435	0.77	-1.9
3,235,110	+		PFLU_RS14435	0.77	-0.9
3,235,110	+		PFLU_RS14435	0.77	-1.2
3,235,110	+		PFLU_RS14435	0.77	-1.2
3,235,110	+		PFLU_RS14435	0.77	+0.1
3,235,110	+		PFLU_RS14435	0.77	+2.1
3,235,110	+		PFLU_RS14435	0.77	-1.1
3,235,110	+		PFLU_RS14435	0.77	-1.5
3,235,110	+		PFLU_RS14435	0.77	-2.0
3,235,110	+		PFLU_RS14435	0.77	-1.3
3,235,110	+		PFLU_RS14435	0.77	-1.4
3,235,110	+		PFLU_RS14435	0.77	+2.8
3,235,110	+		PFLU_RS14435	0.77	-2.0
3,235,111	-		PFLU_RS14435	0.77	-1.9
3,235,111	-		PFLU_RS14435	0.77	-1.1
3,235,111	-		PFLU_RS14435	0.77	+2.4
3,235,111	-		PFLU_RS14435	0.77	-2.7
3,235,111	-		PFLU_RS14435	0.77	+3.7
3,235,111	-		PFLU_RS14435	0.77	+0.3
3,235,111	-		PFLU_RS14435	0.77	-0.0
3,235,111	-		PFLU_RS14435	0.77	-2.2
3,235,111	-		PFLU_RS14435	0.77	+2.3
3,235,111	-		PFLU_RS14435	0.77	+0.3
3,235,111	-		PFLU_RS14435	0.77	-0.3
3,235,111	-		PFLU_RS14435	0.77	-2.4
3,235,111	-		PFLU_RS14435	0.77	+0.3
3,235,111	-		PFLU_RS14435	0.77	+2.4
3,235,111	-		PFLU_RS14435	0.77	+0.8
3,235,112	+		PFLU_RS14435	0.77	+3.5
3,235,112	+		PFLU_RS14435	0.77	+0.7
3,235,112	+		PFLU_RS14435	0.77	-1.8
3,235,112	+		PFLU_RS14435	0.77	-0.1
3,235,112	+		PFLU_RS14435	0.77	+2.4
3,235,112	+		PFLU_RS14435	0.77	-0.1
3,235,112	+		PFLU_RS14435	0.77	+0.8
3,235,112	+		PFLU_RS14435	0.77	+0.3
3,235,112	+		PFLU_RS14435	0.77	+1.9
3,235,112	+		PFLU_RS14435	0.77	+1.8
3,235,113	-		PFLU_RS14435	0.77	-0.5
3,235,113	-		PFLU_RS14435	0.77	-0.7
3,235,113	-		PFLU_RS14435	0.77	+0.1
3,235,113	-		PFLU_RS14435	0.77	-0.5
3,235,113	-		PFLU_RS14435	0.77	-1.6
3,235,113	-		PFLU_RS14435	0.77	-1.4
3,235,113	-		PFLU_RS14435	0.77	-0.1
3,235,113	-		PFLU_RS14435	0.77	+0.3
3,235,113	-		PFLU_RS14435	0.77	-1.8
3,235,113	-		PFLU_RS14435	0.77	+1.7
3,235,113	-		PFLU_RS14435	0.77	-0.7
3,235,113	-		PFLU_RS14435	0.77	-0.3
3,235,113	-		PFLU_RS14435	0.77	-1.8
3,235,113	-		PFLU_RS14435	0.77	-1.3
3,235,113	-		PFLU_RS14435	0.77	-0.5
3,235,113	-		PFLU_RS14435	0.77	+1.5
3,235,113	-		PFLU_RS14435	0.77	-1.2
3,235,113	-		PFLU_RS14435	0.77	+3.6
3,235,113	-		PFLU_RS14435	0.77	+1.0
3,235,113	-		PFLU_RS14435	0.77	-1.3
3,235,113	-		PFLU_RS14435	0.77	+0.7
3,235,113	-		PFLU_RS14435	0.77	+2.7
3,235,113	-		PFLU_RS14435	0.77	-0.1
3,235,113	-		PFLU_RS14435	0.77	-2.1
3,235,364	-				+0.3
3,235,448	+				-1.5
3,235,448	+				+4.4
3,235,448	+				+1.1
3,235,449	-				-0.5
3,235,449	-				+2.9
3,235,449	-				-0.7
3,235,449	-				+1.8
3,235,449	-				+3.1
3,235,449	-				-2.4
3,235,449	-				-0.8
3,235,525	+				+1.3
3,235,525	+				+1.3
3,235,526	-				-0.1
3,235,526	-				+0.6
3,235,541	+				+0.7
3,235,594	-				-0.7
3,235,614	+				+0.3
3,235,614	+				-1.1
3,235,705	+		PFLU_RS14440	0.25	-0.7
3,235,784	-		PFLU_RS14440	0.61	-1.2
3,235,945	-				+1.4
3,235,952	+				+2.3
3,235,952	+				+0.3
3,235,961	-				-1.1
3,236,200	+		PFLU_RS14445	0.38	+1.1
3,236,302	+		PFLU_RS14445	0.52	+1.3
3,236,329	+		PFLU_RS14445	0.56	-0.5
3,236,329	+		PFLU_RS14445	0.56	+2.3
3,236,356	+		PFLU_RS14445	0.60	+1.3
3,236,356	+		PFLU_RS14445	0.60	+3.0
3,236,356	+		PFLU_RS14445	0.60	+0.3
3,236,356	+		PFLU_RS14445	0.60	+1.5
3,236,356	+		PFLU_RS14445	0.60	+0.7
3,236,356	+		PFLU_RS14445	0.60	-0.1
3,236,356	+		PFLU_RS14445	0.60	+1.4
3,236,357	-		PFLU_RS14445	0.60	-0.3
3,236,357	-		PFLU_RS14445	0.60	+0.3
3,236,357	-		PFLU_RS14445	0.60	+2.8
3,236,357	-		PFLU_RS14445	0.60	-1.1
3,236,357	-		PFLU_RS14445	0.60	-1.3
3,236,359	-		PFLU_RS14445	0.60	-1.6
3,236,359	-		PFLU_RS14445	0.60	-0.9
3,236,400	+		PFLU_RS14445	0.66	+0.7