Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03455 and PFLU_RS03460 are separated by 109 nucleotides PFLU_RS03460 and PFLU_RS03465 are separated by 18 nucleotides
PFLU_RS03455: PFLU_RS03455 - cation transporter, at 795,624 to 796,529
_RS03455
PFLU_RS03460: PFLU_RS03460 - TolC family protein, at 796,639 to 797,862
_RS03460
PFLU_RS03465: PFLU_RS03465 - efflux RND transporter periplasmic adaptor subunit, at 797,881 to 798,987
_RS03465
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 795.652 kb on + strand at 795.652 kb on + strand at 795.676 kb on + strand at 795.676 kb on + strand at 795.734 kb on + strand, within PFLU_RS03455 at 795.734 kb on + strand, within PFLU_RS03455 at 795.735 kb on - strand, within PFLU_RS03455 at 795.862 kb on - strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.924 kb on + strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.925 kb on - strand, within PFLU_RS03455 at 795.933 kb on + strand, within PFLU_RS03455 at 795.934 kb on - strand, within PFLU_RS03455 at 795.942 kb on + strand, within PFLU_RS03455 at 795.942 kb on + strand, within PFLU_RS03455 at 795.943 kb on - strand, within PFLU_RS03455 at 795.943 kb on - strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.970 kb on + strand, within PFLU_RS03455 at 795.971 kb on - strand, within PFLU_RS03455 at 795.971 kb on - strand, within PFLU_RS03455 at 795.971 kb on - strand, within PFLU_RS03455 at 796.080 kb on + strand, within PFLU_RS03455 at 796.081 kb on - strand, within PFLU_RS03455 at 796.081 kb on - strand, within PFLU_RS03455 at 796.100 kb on + strand, within PFLU_RS03455 at 796.100 kb on + strand, within PFLU_RS03455 at 796.100 kb on + strand, within PFLU_RS03455 at 796.146 kb on + strand, within PFLU_RS03455 at 796.147 kb on - strand, within PFLU_RS03455 at 796.147 kb on - strand, within PFLU_RS03455 at 796.295 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.324 kb on + strand, within PFLU_RS03455 at 796.325 kb on - strand, within PFLU_RS03455 at 796.325 kb on - strand, within PFLU_RS03455 at 796.325 kb on - strand, within PFLU_RS03455 at 796.325 kb on - strand, within PFLU_RS03455 at 796.325 kb on - strand, within PFLU_RS03455 at 796.325 kb on - strand, within PFLU_RS03455 at 796.337 kb on + strand, within PFLU_RS03455 at 796.337 kb on + strand, within PFLU_RS03455 at 796.337 kb on + strand, within PFLU_RS03455 at 796.337 kb on + strand, within PFLU_RS03455 at 796.337 kb on + strand, within PFLU_RS03455 at 796.337 kb on + strand, within PFLU_RS03455 at 796.337 kb on + strand, within PFLU_RS03455 at 796.337 kb on + strand, within PFLU_RS03455 at 796.338 kb on - strand, within PFLU_RS03455 at 796.338 kb on - strand, within PFLU_RS03455 at 796.458 kb on - strand at 796.548 kb on + strand at 796.548 kb on + strand at 796.548 kb on + strand at 796.548 kb on + strand at 796.548 kb on + strand at 796.548 kb on + strand at 796.549 kb on - strand at 796.549 kb on - strand at 796.549 kb on - strand at 796.571 kb on + strand at 796.571 kb on + strand at 796.571 kb on + strand at 796.571 kb on + strand at 796.571 kb on + strand at 796.571 kb on + strand at 796.572 kb on - strand at 796.572 kb on - strand at 796.572 kb on - strand at 796.572 kb on - strand at 796.572 kb on - strand at 796.572 kb on - strand at 796.576 kb on - strand at 796.576 kb on - strand at 796.585 kb on + strand at 796.585 kb on + strand at 796.585 kb on + strand at 796.585 kb on + strand at 796.585 kb on + strand at 796.586 kb on - strand at 796.586 kb on - strand at 796.586 kb on - strand at 796.586 kb on - strand at 796.586 kb on - strand at 796.586 kb on - strand at 796.607 kb on - strand at 796.638 kb on + strand at 796.638 kb on + strand at 796.869 kb on + strand, within PFLU_RS03460 at 796.870 kb on - strand, within PFLU_RS03460 at 796.891 kb on - strand, within PFLU_RS03460 at 796.953 kb on - strand, within PFLU_RS03460 at 796.953 kb on - strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.023 kb on + strand, within PFLU_RS03460 at 797.024 kb on - strand, within PFLU_RS03460 at 797.024 kb on - strand, within PFLU_RS03460 at 797.024 kb on - strand, within PFLU_RS03460 at 797.024 kb on - strand, within PFLU_RS03460 at 797.024 kb on - strand, within PFLU_RS03460 at 797.024 kb on - strand, within PFLU_RS03460 at 797.024 kb on - strand, within PFLU_RS03460 at 797.024 kb on - strand, within PFLU_RS03460 at 797.026 kb on + strand, within PFLU_RS03460 at 797.026 kb on + strand, within PFLU_RS03460 at 797.026 kb on + strand, within PFLU_RS03460 at 797.027 kb on - strand, within PFLU_RS03460 at 797.204 kb on + strand, within PFLU_RS03460 at 797.205 kb on - strand, within PFLU_RS03460 at 797.415 kb on + strand, within PFLU_RS03460 at 797.415 kb on + strand, within PFLU_RS03460 at 797.416 kb on - strand, within PFLU_RS03460 at 797.416 kb on - strand, within PFLU_RS03460 at 797.449 kb on + strand, within PFLU_RS03460 at 797.449 kb on + strand, within PFLU_RS03460 at 797.450 kb on - strand, within PFLU_RS03460 at 797.450 kb on - strand, within PFLU_RS03460 at 797.450 kb on - strand, within PFLU_RS03460 at 797.450 kb on - strand, within PFLU_RS03460 at 797.785 kb on + strand at 797.786 kb on - strand at 797.786 kb on - strand at 797.786 kb on - strand at 797.840 kb on - strand at 797.944 kb on - strand at 797.944 kb on - strand at 798.033 kb on + strand, within PFLU_RS03465 at 798.033 kb on + strand, within PFLU_RS03465 at 798.033 kb on + strand, within PFLU_RS03465 at 798.033 kb on + strand, within PFLU_RS03465 at 798.034 kb on - strand, within PFLU_RS03465 at 798.085 kb on - strand, within PFLU_RS03465 at 798.085 kb on - strand, within PFLU_RS03465 at 798.085 kb on - strand, within PFLU_RS03465 at 798.307 kb on + strand, within PFLU_RS03465 at 798.307 kb on + strand, within PFLU_RS03465 at 798.307 kb on + strand, within PFLU_RS03465 at 798.308 kb on - strand, within PFLU_RS03465 at 798.308 kb on - strand, within PFLU_RS03465 at 798.308 kb on - strand, within PFLU_RS03465 at 798.308 kb on - strand, within PFLU_RS03465 at 798.308 kb on - strand, within PFLU_RS03465 at 798.380 kb on + strand, within PFLU_RS03465 at 798.381 kb on - strand, within PFLU_RS03465 at 798.381 kb on - strand, within PFLU_RS03465 at 798.381 kb on - strand, within PFLU_RS03465 at 798.381 kb on - strand, within PFLU_RS03465 at 798.542 kb on + strand, within PFLU_RS03465 at 798.542 kb on + strand, within PFLU_RS03465 at 798.542 kb on + strand, within PFLU_RS03465 at 798.543 kb on - strand, within PFLU_RS03465 at 798.543 kb on - strand, within PFLU_RS03465 at 798.567 kb on - strand, within PFLU_RS03465 at 798.567 kb on - strand, within PFLU_RS03465 at 798.567 kb on - strand, within PFLU_RS03465 at 798.567 kb on - strand, within PFLU_RS03465 at 798.567 kb on - strand, within PFLU_RS03465 at 798.567 kb on - strand, within PFLU_RS03465 at 798.567 kb on - strand, within PFLU_RS03465 at 798.567 kb on - strand, within PFLU_RS03465 at 798.634 kb on + strand, within PFLU_RS03465 at 798.635 kb on - strand, within PFLU_RS03465 at 798.635 kb on - strand, within PFLU_RS03465 at 798.635 kb on - strand, within PFLU_RS03465 at 798.635 kb on - strand, within PFLU_RS03465 at 798.722 kb on + strand, within PFLU_RS03465 at 798.723 kb on - strand, within PFLU_RS03465
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride remove 795,652 + +1.3 795,652 + +0.0 795,676 + +2.7 795,676 + +0.6 795,734 + PFLU_RS03455 0.12 -1.5 795,734 + PFLU_RS03455 0.12 +3.7 795,735 - PFLU_RS03455 0.12 -1.5 795,862 - PFLU_RS03455 0.26 +2.4 795,924 + PFLU_RS03455 0.33 -2.5 795,924 + PFLU_RS03455 0.33 -1.8 795,924 + PFLU_RS03455 0.33 +3.1 795,924 + PFLU_RS03455 0.33 +2.6 795,924 + PFLU_RS03455 0.33 +0.8 795,924 + PFLU_RS03455 0.33 -1.6 795,924 + PFLU_RS03455 0.33 +1.7 795,925 - PFLU_RS03455 0.33 -0.5 795,925 - PFLU_RS03455 0.33 +0.5 795,925 - PFLU_RS03455 0.33 -0.8 795,925 - PFLU_RS03455 0.33 +2.7 795,925 - PFLU_RS03455 0.33 +0.2 795,925 - PFLU_RS03455 0.33 +0.6 795,925 - PFLU_RS03455 0.33 +1.4 795,925 - PFLU_RS03455 0.33 -1.9 795,925 - PFLU_RS03455 0.33 -2.6 795,925 - PFLU_RS03455 0.33 +0.9 795,925 - PFLU_RS03455 0.33 +1.0 795,925 - PFLU_RS03455 0.33 +0.9 795,925 - PFLU_RS03455 0.33 -1.3 795,925 - PFLU_RS03455 0.33 +1.6 795,925 - PFLU_RS03455 0.33 +1.7 795,933 + PFLU_RS03455 0.34 -0.3 795,934 - PFLU_RS03455 0.34 +1.4 795,942 + PFLU_RS03455 0.35 +1.1 795,942 + PFLU_RS03455 0.35 -2.1 795,943 - PFLU_RS03455 0.35 -1.8 795,943 - PFLU_RS03455 0.35 -1.5 795,970 + PFLU_RS03455 0.38 -1.8 795,970 + PFLU_RS03455 0.38 -2.9 795,970 + PFLU_RS03455 0.38 +3.1 795,970 + PFLU_RS03455 0.38 -1.1 795,970 + PFLU_RS03455 0.38 +1.4 795,970 + PFLU_RS03455 0.38 +0.7 795,971 - PFLU_RS03455 0.38 +1.0 795,971 - PFLU_RS03455 0.38 +2.0 795,971 - PFLU_RS03455 0.38 +1.7 796,080 + PFLU_RS03455 0.50 -0.3 796,081 - PFLU_RS03455 0.50 -0.9 796,081 - PFLU_RS03455 0.50 +0.4 796,100 + PFLU_RS03455 0.53 -1.4 796,100 + PFLU_RS03455 0.53 +0.5 796,100 + PFLU_RS03455 0.53 -1.8 796,146 + PFLU_RS03455 0.58 +2.1 796,147 - PFLU_RS03455 0.58 +0.8 796,147 - PFLU_RS03455 0.58 -0.2 796,295 + PFLU_RS03455 0.74 +1.4 796,324 + PFLU_RS03455 0.77 +1.2 796,324 + PFLU_RS03455 0.77 -1.7 796,324 + PFLU_RS03455 0.77 -1.8 796,324 + PFLU_RS03455 0.77 +1.3 796,324 + PFLU_RS03455 0.77 -0.3 796,324 + PFLU_RS03455 0.77 +0.1 796,324 + PFLU_RS03455 0.77 -1.1 796,324 + PFLU_RS03455 0.77 +3.2 796,324 + PFLU_RS03455 0.77 +0.2 796,324 + PFLU_RS03455 0.77 +1.2 796,324 + PFLU_RS03455 0.77 -1.5 796,324 + PFLU_RS03455 0.77 +0.4 796,324 + PFLU_RS03455 0.77 +0.3 796,325 - PFLU_RS03455 0.77 -0.9 796,325 - PFLU_RS03455 0.77 -1.6 796,325 - PFLU_RS03455 0.77 +0.8 796,325 - PFLU_RS03455 0.77 -1.4 796,325 - PFLU_RS03455 0.77 -0.3 796,325 - PFLU_RS03455 0.77 -2.7 796,337 + PFLU_RS03455 0.79 +1.3 796,337 + PFLU_RS03455 0.79 -1.8 796,337 + PFLU_RS03455 0.79 +0.4 796,337 + PFLU_RS03455 0.79 -0.3 796,337 + PFLU_RS03455 0.79 +0.1 796,337 + PFLU_RS03455 0.79 -2.2 796,337 + PFLU_RS03455 0.79 +2.4 796,337 + PFLU_RS03455 0.79 -0.5 796,338 - PFLU_RS03455 0.79 -1.5 796,338 - PFLU_RS03455 0.79 -2.5 796,458 - -0.3 796,548 + +2.7 796,548 + -2.0 796,548 + -2.4 796,548 + -0.1 796,548 + -0.6 796,548 + -1.0 796,549 - -0.2 796,549 - -0.3 796,549 - +3.2 796,571 + +0.7 796,571 + +2.5 796,571 + +2.1 796,571 + -1.1 796,571 + +2.8 796,571 + -0.1 796,572 - -2.0 796,572 - -1.8 796,572 - +1.5 796,572 - +1.2 796,572 - +0.7 796,572 - -1.5 796,576 - +0.6 796,576 - +1.9 796,585 + -0.9 796,585 + +0.3 796,585 + +0.1 796,585 + +1.0 796,585 + -1.5 796,586 - -3.0 796,586 - +0.1 796,586 - +1.5 796,586 - -1.1 796,586 - +1.5 796,586 - -2.3 796,607 - +0.7 796,638 + +1.7 796,638 + -1.5 796,869 + PFLU_RS03460 0.19 -1.2 796,870 - PFLU_RS03460 0.19 -2.5 796,891 - PFLU_RS03460 0.21 -0.3 796,953 - PFLU_RS03460 0.26 +0.1 796,953 - PFLU_RS03460 0.26 +1.7 797,023 + PFLU_RS03460 0.31 +2.7 797,023 + PFLU_RS03460 0.31 -1.2 797,023 + PFLU_RS03460 0.31 +0.5 797,023 + PFLU_RS03460 0.31 +1.7 797,023 + PFLU_RS03460 0.31 +1.8 797,023 + PFLU_RS03460 0.31 +0.4 797,023 + PFLU_RS03460 0.31 +3.2 797,023 + PFLU_RS03460 0.31 +1.1 797,023 + PFLU_RS03460 0.31 -2.4 797,023 + PFLU_RS03460 0.31 -2.2 797,023 + PFLU_RS03460 0.31 -0.9 797,023 + PFLU_RS03460 0.31 +0.3 797,023 + PFLU_RS03460 0.31 -0.3 797,023 + PFLU_RS03460 0.31 +1.2 797,024 - PFLU_RS03460 0.31 +1.8 797,024 - PFLU_RS03460 0.31 -1.5 797,024 - PFLU_RS03460 0.31 +3.0 797,024 - PFLU_RS03460 0.31 -1.3 797,024 - PFLU_RS03460 0.31 +0.3 797,024 - PFLU_RS03460 0.31 -1.1 797,024 - PFLU_RS03460 0.31 -1.8 797,024 - PFLU_RS03460 0.31 -1.0 797,026 + PFLU_RS03460 0.32 +1.6 797,026 + PFLU_RS03460 0.32 +3.3 797,026 + PFLU_RS03460 0.32 -0.5 797,027 - PFLU_RS03460 0.32 -0.4 797,204 + PFLU_RS03460 0.46 -0.6 797,205 - PFLU_RS03460 0.46 +2.0 797,415 + PFLU_RS03460 0.63 -2.2 797,415 + PFLU_RS03460 0.63 +1.5 797,416 - PFLU_RS03460 0.63 +1.4 797,416 - PFLU_RS03460 0.63 -0.6 797,449 + PFLU_RS03460 0.66 +1.6 797,449 + PFLU_RS03460 0.66 +0.1 797,450 - PFLU_RS03460 0.66 +1.1 797,450 - PFLU_RS03460 0.66 -2.4 797,450 - PFLU_RS03460 0.66 +0.1 797,450 - PFLU_RS03460 0.66 +0.5 797,785 + +0.2 797,786 - +1.7 797,786 - +2.8 797,786 - +3.7 797,840 - +0.8 797,944 - +1.7 797,944 - +0.4 798,033 + PFLU_RS03465 0.14 +1.5 798,033 + PFLU_RS03465 0.14 -1.9 798,033 + PFLU_RS03465 0.14 -1.7 798,033 + PFLU_RS03465 0.14 +1.2 798,034 - PFLU_RS03465 0.14 +1.1 798,085 - PFLU_RS03465 0.18 -1.6 798,085 - PFLU_RS03465 0.18 +0.4 798,085 - PFLU_RS03465 0.18 +0.5 798,307 + PFLU_RS03465 0.38 -2.4 798,307 + PFLU_RS03465 0.38 -2.3 798,307 + PFLU_RS03465 0.38 +0.1 798,308 - PFLU_RS03465 0.39 +0.1 798,308 - PFLU_RS03465 0.39 -1.1 798,308 - PFLU_RS03465 0.39 +1.4 798,308 - PFLU_RS03465 0.39 +1.1 798,308 - PFLU_RS03465 0.39 -2.6 798,380 + PFLU_RS03465 0.45 +1.9 798,381 - PFLU_RS03465 0.45 +0.7 798,381 - PFLU_RS03465 0.45 +1.7 798,381 - PFLU_RS03465 0.45 +1.5 798,381 - PFLU_RS03465 0.45 -1.5 798,542 + PFLU_RS03465 0.60 -2.1 798,542 + PFLU_RS03465 0.60 -0.1 798,542 + PFLU_RS03465 0.60 -2.2 798,543 - PFLU_RS03465 0.60 +1.0 798,543 - PFLU_RS03465 0.60 -0.5 798,567 - PFLU_RS03465 0.62 -0.1 798,567 - PFLU_RS03465 0.62 -0.6 798,567 - PFLU_RS03465 0.62 +0.6 798,567 - PFLU_RS03465 0.62 +1.1 798,567 - PFLU_RS03465 0.62 +0.2 798,567 - PFLU_RS03465 0.62 -2.2 798,567 - PFLU_RS03465 0.62 +1.7 798,567 - PFLU_RS03465 0.62 -0.5 798,634 + PFLU_RS03465 0.68 +1.4 798,635 - PFLU_RS03465 0.68 -2.0 798,635 - PFLU_RS03465 0.68 -1.4 798,635 - PFLU_RS03465 0.68 -1.2 798,635 - PFLU_RS03465 0.68 -1.7 798,722 + PFLU_RS03465 0.76 -1.2 798,723 - PFLU_RS03465 0.76 +0.0
Or see this region's nucleotide sequence