Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1477

Experiment: MoLS4 with Citrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1475 and DVU1476 are separated by 250 nucleotidesDVU1476 and DVU1477 are separated by 405 nucleotidesDVU1477 and DVU1478 are separated by 283 nucleotidesDVU1478 and DVU1479 are separated by 8 nucleotides DVU1475: DVU1475 - PhoU family protein (TIGR), at 1,555,564 to 1,556,241 DVU1475 DVU1476: DVU1476 - hypothetical protein (TIGR), at 1,556,492 to 1,556,701 DVU1476 DVU1477: DVU1477 - hypothetical protein (TIGR), at 1,557,107 to 1,557,733 DVU1477 DVU1478: DVU1478 - hypothetical protein (TIGR), at 1,558,017 to 1,558,655 DVU1478 DVU1479: DVU1479 - conserved hypothetical protein (TIGR), at 1,558,664 to 1,559,671 DVU1479 Position (kb) 1557 1558Strain fitness (log2 ratio) -1 0 1at 1556.146 kb on - strand, within DVU1475at 1556.187 kb on - strandat 1556.268 kb on - strandat 1556.278 kb on - strandat 1556.345 kb on - strandat 1556.351 kb on - strandat 1556.411 kb on - strandat 1556.629 kb on + strand, within DVU1476at 1556.656 kb on - strand, within DVU1476at 1556.656 kb on - strand, within DVU1476at 1556.675 kb on - strand, within DVU1476at 1556.881 kb on - strandat 1556.907 kb on - strandat 1556.920 kb on - strandat 1556.997 kb on - strandat 1557.039 kb on + strandat 1557.047 kb on - strandat 1557.067 kb on - strandat 1557.146 kb on + strandat 1557.225 kb on + strand, within DVU1477at 1557.226 kb on - strand, within DVU1477at 1557.230 kb on + strand, within DVU1477at 1557.231 kb on - strand, within DVU1477at 1557.319 kb on + strand, within DVU1477at 1557.335 kb on - strand, within DVU1477at 1557.421 kb on + strand, within DVU1477at 1557.446 kb on - strand, within DVU1477at 1557.556 kb on + strand, within DVU1477at 1557.557 kb on + strand, within DVU1477at 1557.631 kb on - strand, within DVU1477at 1557.666 kb on + strand, within DVU1477at 1557.669 kb on + strand, within DVU1477at 1557.757 kb on - strandat 1557.790 kb on - strandat 1557.790 kb on - strandat 1558.480 kb on + strand, within DVU1478at 1558.641 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Citrate 10mM
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1,556,146 - DVU1475 0.86 +0.6
1,556,187 - -0.9
1,556,268 - +0.3
1,556,278 - -0.8
1,556,345 - +0.3
1,556,351 - -0.2
1,556,411 - +0.1
1,556,629 + DVU1476 0.65 -0.5
1,556,656 - DVU1476 0.78 +0.5
1,556,656 - DVU1476 0.78 -0.9
1,556,675 - DVU1476 0.87 -0.6
1,556,881 - +0.7
1,556,907 - -0.3
1,556,920 - +0.2
1,556,997 - -0.1
1,557,039 + -0.4
1,557,047 - -0.8
1,557,067 - -1.1
1,557,146 + -0.4
1,557,225 + DVU1477 0.19 +0.5
1,557,226 - DVU1477 0.19 -1.4
1,557,230 + DVU1477 0.20 -0.0
1,557,231 - DVU1477 0.20 -0.9
1,557,319 + DVU1477 0.34 +0.3
1,557,335 - DVU1477 0.36 +0.2
1,557,421 + DVU1477 0.50 -1.6
1,557,446 - DVU1477 0.54 -0.3
1,557,556 + DVU1477 0.72 +0.1
1,557,557 + DVU1477 0.72 -1.5
1,557,631 - DVU1477 0.84 -0.3
1,557,666 + DVU1477 0.89 +0.7
1,557,669 + DVU1477 0.90 -0.7
1,557,757 - +1.1
1,557,790 - -1.6
1,557,790 - +0.1
1,558,480 + DVU1478 0.72 +0.7
1,558,641 + +0.7

Or see this region's nucleotide sequence