Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0086

Experiment: MoLS4 with Citrate 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVUA0085 and DVUA0086 are separated by 111 nucleotidesDVUA0086 and DORF702 overlap by 4 nucleotidesDORF702 and DVUA0087 overlap by 4 nucleotides DVUA0085: DVUA0085 - conserved hypothetical protein (TIGR), at 111,356 to 114,886 DVUA0085 DVUA0086: DVUA0086 - response regulator (TIGR), at 114,998 to 116,089 DVUA0086 DORF702: DORF702 - no description, at 116,086 to 116,478 DORF702 DVUA0087: DVUA0087 - sensory box histidine kinase (TIGR), at 116,475 to 119,588 DVUA0087 Position (kb) 114 115 116 117Strain fitness (log2 ratio) -2 -1 0 1at 114.013 kb on + strand, within DVUA0085at 114.070 kb on + strand, within DVUA0085at 114.141 kb on - strand, within DVUA0085at 114.143 kb on + strand, within DVUA0085at 114.143 kb on + strand, within DVUA0085at 114.159 kb on + strand, within DVUA0085at 114.197 kb on + strand, within DVUA0085at 114.347 kb on + strand, within DVUA0085at 114.422 kb on - strand, within DVUA0085at 114.570 kb on + strandat 114.589 kb on - strandat 114.655 kb on + strandat 114.663 kb on - strandat 114.919 kb on - strandat 114.929 kb on + strandat 114.929 kb on + strandat 114.934 kb on + strandat 114.986 kb on - strandat 115.114 kb on + strand, within DVUA0086at 115.136 kb on + strand, within DVUA0086at 115.227 kb on + strand, within DVUA0086at 115.227 kb on - strand, within DVUA0086at 115.437 kb on + strand, within DVUA0086at 115.438 kb on + strand, within DVUA0086at 115.445 kb on - strand, within DVUA0086at 115.450 kb on + strand, within DVUA0086at 115.472 kb on - strand, within DVUA0086at 115.524 kb on - strand, within DVUA0086at 115.662 kb on + strand, within DVUA0086at 115.736 kb on - strand, within DVUA0086at 115.747 kb on + strand, within DVUA0086at 115.750 kb on - strand, within DVUA0086at 115.910 kb on + strand, within DVUA0086at 115.911 kb on + strand, within DVUA0086at 115.919 kb on - strand, within DVUA0086at 115.919 kb on - strand, within DVUA0086at 115.984 kb on + strandat 116.207 kb on - strand, within DORF702at 116.326 kb on - strand, within DORF702at 116.486 kb on + strandat 116.499 kb on - strandat 116.543 kb on + strandat 116.543 kb on + strandat 116.603 kb on + strandat 116.614 kb on + strandat 116.750 kb on - strandat 116.811 kb on + strand, within DVUA0087at 116.818 kb on + strand, within DVUA0087at 117.026 kb on + strand, within DVUA0087at 117.069 kb on + strand, within DVUA0087

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Citrate 10mM
remove
114,013 + DVUA0085 0.75 -0.7
114,070 + DVUA0085 0.77 -0.9
114,141 - DVUA0085 0.79 -0.4
114,143 + DVUA0085 0.79 +0.1
114,143 + DVUA0085 0.79 +0.1
114,159 + DVUA0085 0.79 -1.9
114,197 + DVUA0085 0.80 -1.2
114,347 + DVUA0085 0.85 -1.0
114,422 - DVUA0085 0.87 -0.4
114,570 + +0.0
114,589 - -0.4
114,655 + +0.5
114,663 - +0.2
114,919 - -0.3
114,929 + -0.6
114,929 + -0.5
114,934 + -0.4
114,986 - +0.4
115,114 + DVUA0086 0.11 -0.1
115,136 + DVUA0086 0.13 -0.2
115,227 + DVUA0086 0.21 -1.1
115,227 - DVUA0086 0.21 -0.9
115,437 + DVUA0086 0.40 +1.6
115,438 + DVUA0086 0.40 -1.0
115,445 - DVUA0086 0.41 -1.3
115,450 + DVUA0086 0.41 -1.2
115,472 - DVUA0086 0.43 -0.6
115,524 - DVUA0086 0.48 -1.4
115,662 + DVUA0086 0.61 -0.6
115,736 - DVUA0086 0.68 -1.2
115,747 + DVUA0086 0.69 -1.1
115,750 - DVUA0086 0.69 +0.5
115,910 + DVUA0086 0.84 -1.4
115,911 + DVUA0086 0.84 -0.3
115,919 - DVUA0086 0.84 -1.9
115,919 - DVUA0086 0.84 -0.7
115,984 + -0.1
116,207 - DORF702 0.31 -0.6
116,326 - DORF702 0.61 -0.2
116,486 + -1.4
116,499 - +0.1
116,543 + +0.4
116,543 + -0.5
116,603 + -0.6
116,614 + -0.3
116,750 - -0.2
116,811 + DVUA0087 0.11 -0.5
116,818 + DVUA0087 0.11 -0.1
117,026 + DVUA0087 0.18 -1.0
117,069 + DVUA0087 0.19 -0.8

Or see this region's nucleotide sequence