Experiment: MoLS4 with Citrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0085 and DVUA0086 are separated by 111 nucleotides DVUA0086 and DORF702 overlap by 4 nucleotides DORF702 and DVUA0087 overlap by 4 nucleotides
DVUA0085: DVUA0085 - conserved hypothetical protein (TIGR), at 111,356 to 114,886
DVUA0085
DVUA0086: DVUA0086 - response regulator (TIGR), at 114,998 to 116,089
DVUA0086
DORF702: DORF702 - no description, at 116,086 to 116,478
DORF702
DVUA0087: DVUA0087 - sensory box histidine kinase (TIGR), at 116,475 to 119,588
DVUA0087
Position (kb)
114
115
116
117 Strain fitness (log2 ratio)
-2
-1
0
1 at 114.013 kb on + strand, within DVUA0085 at 114.070 kb on + strand, within DVUA0085 at 114.141 kb on - strand, within DVUA0085 at 114.143 kb on + strand, within DVUA0085 at 114.143 kb on + strand, within DVUA0085 at 114.159 kb on + strand, within DVUA0085 at 114.197 kb on + strand, within DVUA0085 at 114.347 kb on + strand, within DVUA0085 at 114.422 kb on - strand, within DVUA0085 at 114.570 kb on + strand at 114.589 kb on - strand at 114.655 kb on + strand at 114.663 kb on - strand at 114.919 kb on - strand at 114.929 kb on + strand at 114.929 kb on + strand at 114.934 kb on + strand at 114.986 kb on - strand at 115.114 kb on + strand, within DVUA0086 at 115.136 kb on + strand, within DVUA0086 at 115.227 kb on + strand, within DVUA0086 at 115.227 kb on - strand, within DVUA0086 at 115.437 kb on + strand, within DVUA0086 at 115.438 kb on + strand, within DVUA0086 at 115.445 kb on - strand, within DVUA0086 at 115.450 kb on + strand, within DVUA0086 at 115.472 kb on - strand, within DVUA0086 at 115.524 kb on - strand, within DVUA0086 at 115.662 kb on + strand, within DVUA0086 at 115.736 kb on - strand, within DVUA0086 at 115.747 kb on + strand, within DVUA0086 at 115.750 kb on - strand, within DVUA0086 at 115.910 kb on + strand, within DVUA0086 at 115.911 kb on + strand, within DVUA0086 at 115.919 kb on - strand, within DVUA0086 at 115.919 kb on - strand, within DVUA0086 at 115.984 kb on + strand at 116.207 kb on - strand, within DORF702 at 116.326 kb on - strand, within DORF702 at 116.486 kb on + strand at 116.499 kb on - strand at 116.543 kb on + strand at 116.543 kb on + strand at 116.603 kb on + strand at 116.614 kb on + strand at 116.750 kb on - strand at 116.811 kb on + strand, within DVUA0087 at 116.818 kb on + strand, within DVUA0087 at 117.026 kb on + strand, within DVUA0087 at 117.069 kb on + strand, within DVUA0087
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Citrate 10mM remove 114,013 + DVUA0085 0.75 -0.7 114,070 + DVUA0085 0.77 -0.9 114,141 - DVUA0085 0.79 -0.4 114,143 + DVUA0085 0.79 +0.1 114,143 + DVUA0085 0.79 +0.1 114,159 + DVUA0085 0.79 -1.9 114,197 + DVUA0085 0.80 -1.2 114,347 + DVUA0085 0.85 -1.0 114,422 - DVUA0085 0.87 -0.4 114,570 + +0.0 114,589 - -0.4 114,655 + +0.5 114,663 - +0.2 114,919 - -0.3 114,929 + -0.6 114,929 + -0.5 114,934 + -0.4 114,986 - +0.4 115,114 + DVUA0086 0.11 -0.1 115,136 + DVUA0086 0.13 -0.2 115,227 + DVUA0086 0.21 -1.1 115,227 - DVUA0086 0.21 -0.9 115,437 + DVUA0086 0.40 +1.6 115,438 + DVUA0086 0.40 -1.0 115,445 - DVUA0086 0.41 -1.3 115,450 + DVUA0086 0.41 -1.2 115,472 - DVUA0086 0.43 -0.6 115,524 - DVUA0086 0.48 -1.4 115,662 + DVUA0086 0.61 -0.6 115,736 - DVUA0086 0.68 -1.2 115,747 + DVUA0086 0.69 -1.1 115,750 - DVUA0086 0.69 +0.5 115,910 + DVUA0086 0.84 -1.4 115,911 + DVUA0086 0.84 -0.3 115,919 - DVUA0086 0.84 -1.9 115,919 - DVUA0086 0.84 -0.7 115,984 + -0.1 116,207 - DORF702 0.31 -0.6 116,326 - DORF702 0.61 -0.2 116,486 + -1.4 116,499 - +0.1 116,543 + +0.4 116,543 + -0.5 116,603 + -0.6 116,614 + -0.3 116,750 - -0.2 116,811 + DVUA0087 0.11 -0.5 116,818 + DVUA0087 0.11 -0.1 117,026 + DVUA0087 0.18 -1.0 117,069 + DVUA0087 0.19 -0.8
Or see this region's nucleotide sequence