Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31515

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
2,187,536	+		PFLU_RS09915	0.41	-1.8
2,187,536	+		PFLU_RS09915	0.41	+0.8
2,187,536	+		PFLU_RS09915	0.41	+0.9
2,187,536	+		PFLU_RS09915	0.41	+2.0
2,187,536	+		PFLU_RS09915	0.41	+0.6
2,187,536	+		PFLU_RS09915	0.41	-2.1
2,187,536	+		PFLU_RS09915	0.41	-1.6
2,187,537	-		PFLU_RS09915	0.41	-0.9
2,187,537	-		PFLU_RS09915	0.41	+1.3
2,187,539	+		PFLU_RS09915	0.41	+0.8
2,187,539	+		PFLU_RS09915	0.41	+0.1
2,187,539	+		PFLU_RS09915	0.41	+1.6
2,187,539	+		PFLU_RS09915	0.41	-0.9
2,187,539	+		PFLU_RS09915	0.41	-0.9
2,187,540	-		PFLU_RS09915	0.41	-2.0
2,187,540	-		PFLU_RS09915	0.41	+0.1
2,187,540	-		PFLU_RS09915	0.41	-0.7
2,187,540	-		PFLU_RS09915	0.41	-1.2
2,187,540	-		PFLU_RS09915	0.41	-0.4
2,187,540	-		PFLU_RS09915	0.41	+0.2
2,187,540	-		PFLU_RS09915	0.41	+1.2
2,187,540	-		PFLU_RS09915	0.41	-1.6
2,187,540	-		PFLU_RS09915	0.41	-1.0
2,187,569	+		PFLU_RS09915	0.43	+2.4
2,187,569	+		PFLU_RS09915	0.43	+1.7
2,187,569	+		PFLU_RS09915	0.43	-2.0
2,187,569	+		PFLU_RS09915	0.43	-0.4
2,187,570	-		PFLU_RS09915	0.43	+0.4
2,187,570	-		PFLU_RS09915	0.43	+1.4
2,187,570	-		PFLU_RS09915	0.43	-1.4
2,187,570	-		PFLU_RS09915	0.43	-2.3
2,187,570	-		PFLU_RS09915	0.43	+0.1
2,187,573	+		PFLU_RS09915	0.43	-2.2
2,187,573	+		PFLU_RS09915	0.43	-2.2
2,187,574	-		PFLU_RS09915	0.43	+1.4
2,187,574	-		PFLU_RS09915	0.43	-1.8
2,187,574	-		PFLU_RS09915	0.43	-0.2
2,187,591	+		PFLU_RS09915	0.44	-1.4
2,187,591	+		PFLU_RS09915	0.44	+0.1
2,187,591	+		PFLU_RS09915	0.44	+1.0
2,187,591	+		PFLU_RS09915	0.44	-0.2
2,187,591	+		PFLU_RS09915	0.44	+1.5
2,187,591	+		PFLU_RS09915	0.44	-0.4
2,187,591	+		PFLU_RS09915	0.44	-1.9
2,187,592	-		PFLU_RS09915	0.44	+1.7
2,187,592	-		PFLU_RS09915	0.44	-1.6
2,187,592	-		PFLU_RS09915	0.44	-0.4
2,187,592	-		PFLU_RS09915	0.44	+1.4
2,187,592	-		PFLU_RS09915	0.44	-2.8
2,187,592	-		PFLU_RS09915	0.44	+0.7
2,187,592	-		PFLU_RS09915	0.44	-0.4
2,187,592	-		PFLU_RS09915	0.44	-0.2
2,187,592	-		PFLU_RS09915	0.44	+0.4
2,187,592	-		PFLU_RS09915	0.44	-1.7
2,187,678	+		PFLU_RS09915	0.50	-1.4
2,187,679	-		PFLU_RS09915	0.50	+2.0
2,187,683	+		PFLU_RS09915	0.50	-2.6
2,187,714	+		PFLU_RS09915	0.52	-1.6
2,187,714	+		PFLU_RS09915	0.52	-0.6
2,187,714	+		PFLU_RS09915	0.52	+0.4
2,187,714	+		PFLU_RS09915	0.52	+1.1
2,187,714	+		PFLU_RS09915	0.52	+3.1
2,187,714	+		PFLU_RS09915	0.52	+2.2
2,187,714	+		PFLU_RS09915	0.52	+3.7
2,187,715	-		PFLU_RS09915	0.52	-2.3
2,187,715	-		PFLU_RS09915	0.52	+1.6
2,187,715	-		PFLU_RS09915	0.52	-1.3
2,187,715	-		PFLU_RS09915	0.52	+4.7
2,187,715	-		PFLU_RS09915	0.52	+0.4
2,187,715	-		PFLU_RS09915	0.52	-1.5
2,187,715	-		PFLU_RS09915	0.52	-0.3
2,187,715	-		PFLU_RS09915	0.52	+2.2
2,187,715	-		PFLU_RS09915	0.52	-0.6
2,187,715	-		PFLU_RS09915	0.52	-0.2
2,187,788	+		PFLU_RS09915	0.57	+0.7
2,187,789	-		PFLU_RS09915	0.57	+0.9
2,187,789	-		PFLU_RS09915	0.57	-2.3
2,187,794	+		PFLU_RS09915	0.57	+0.1
2,187,794	+		PFLU_RS09915	0.57	+0.5
2,187,795	-		PFLU_RS09915	0.57	+1.4
2,187,795	-		PFLU_RS09915	0.57	-0.4
2,187,795	-		PFLU_RS09915	0.57	-0.4
2,187,876	-		PFLU_RS09915	0.63	-1.2
2,187,876	-		PFLU_RS09915	0.63	+0.4
2,187,876	-		PFLU_RS09915	0.63	+1.1
2,187,876	-		PFLU_RS09915	0.63	-0.4
2,187,876	-		PFLU_RS09915	0.63	-2.5
2,187,902	-		PFLU_RS09915	0.64	+0.2
2,187,902	-		PFLU_RS09915	0.64	+0.8
2,187,939	+		PFLU_RS09915	0.67	-1.5
2,187,939	+		PFLU_RS09915	0.67	-0.7
2,187,939	+		PFLU_RS09915	0.67	-2.5
2,187,939	+		PFLU_RS09915	0.67	+1.1
2,187,939	+		PFLU_RS09915	0.67	+0.3
2,187,939	+		PFLU_RS09915	0.67	+0.1
2,187,939	+		PFLU_RS09915	0.67	-2.0
2,187,939	+		PFLU_RS09915	0.67	+2.1
2,187,939	+		PFLU_RS09915	0.67	-0.9
2,187,939	+		PFLU_RS09915	0.67	-0.6
2,187,939	+		PFLU_RS09915	0.67	+2.2
2,187,940	-		PFLU_RS09915	0.67	-0.6
2,187,940	-		PFLU_RS09915	0.67	-0.4
2,187,940	-		PFLU_RS09915	0.67	-2.1
2,188,060	+		PFLU_RS09915	0.75	-0.7
2,188,061	-		PFLU_RS09915	0.75	+0.4
2,188,123	+		PFLU_RS09915	0.79	-1.0
2,188,123	+		PFLU_RS09915	0.79	-2.5
2,188,123	+		PFLU_RS09915	0.79	+2.4
2,188,124	-		PFLU_RS09915	0.79	+2.5
2,188,165	+		PFLU_RS09915	0.81	-0.2
2,188,166	-		PFLU_RS09915	0.81	+0.8
2,188,175	+		PFLU_RS09915	0.82	-1.5
2,188,175	+		PFLU_RS09915	0.82	+3.5
2,188,175	+		PFLU_RS09915	0.82	+0.7
2,188,175	+		PFLU_RS09915	0.82	+0.1
2,188,176	-		PFLU_RS09915	0.82	-0.1
2,188,207	-		PFLU_RS09915	0.84	-1.4
2,188,303	+				-0.6
2,188,306	+				-0.7
2,188,306	+				-2.2
2,188,306	+				+0.1
2,188,307	-				+0.2
2,188,412	+				-1.5
2,188,412	+				+1.2
2,188,412	+				+0.1
2,188,412	+				+0.4
2,188,412	+				+1.5
2,188,412	+				+1.2
2,188,412	+				-0.1
2,188,413	-				-0.6
2,188,413	-				-1.9
2,188,413	-				-0.6
2,188,413	-				-1.7
2,188,413	-				-1.2
2,188,413	-				-2.6
2,188,413	-				+2.9
2,188,413	-				-2.2
2,188,413	-				+1.2
2,188,415	+				+0.7
2,188,415	+				-0.9
2,188,416	-				-1.7
2,188,416	-				-0.6
2,188,416	-				-2.3
2,188,528	+				-1.6
2,188,529	-				-1.5
2,188,529	-				+0.1
2,188,529	-				+2.4
2,188,620	+				-3.2
2,188,621	-				-0.3
2,188,621	-				+1.0
2,188,629	+				+0.8
2,188,630	-				+0.8
2,188,647	-				+0.1
2,188,701	-				-2.4
2,188,730	+				+0.4
2,188,730	+				-1.7
2,188,730	+				-1.3
2,188,730	+				+0.4
2,188,731	-				-1.2
2,188,731	-				-1.4
2,188,731	-				+0.4
2,188,731	-				-0.7
2,188,731	-				+0.1
2,188,731	-				+0.2
2,188,731	-				-1.0
2,188,899	-		PFLU_RS30615	0.79	+0.4
2,188,899	-		PFLU_RS30615	0.79	+1.9
2,188,906	+		PFLU_RS30615	0.82	-2.3
2,188,906	+		PFLU_RS30615	0.82	+0.7
2,188,907	-		PFLU_RS30615	0.83	-0.6
2,188,907	-		PFLU_RS30615	0.83	+0.3
2,188,979	+				+0.7
2,189,025	+				-0.7
2,189,025	+				-0.9
2,189,025	+				+2.7
2,189,026	-				+1.4
2,189,026	-				+0.5
2,189,026	-				-2.0
2,189,106	+				+0.4
2,189,106	+				+1.8
2,189,106	+				+1.2
2,189,106	+				+0.1
2,189,106	+				+0.1
2,189,106	+				-2.7
2,189,107	-				-1.9
2,189,107	-				-0.2
2,189,107	-				+1.4
2,189,107	-				+1.7
2,189,107	-				-1.7
2,189,107	-				+2.8
2,189,107	-				-2.4
2,189,107	-				-0.4
2,189,107	-				+1.1
2,189,201	+				-1.2
2,189,201	+				-1.0
2,189,201	+				-0.4
2,189,201	+				+1.4
2,189,201	+				-1.1
2,189,202	-				+0.8
2,189,202	-				-0.2
2,189,202	-				-0.4
2,189,202	-				-1.5
2,189,202	-				-1.3
2,189,202	-				+2.9
2,189,202	-				-1.3
2,189,202	-				+0.9
2,189,202	-				+1.6
2,189,251	+				+0.4
2,189,251	+				+1.4
2,189,251	+				-2.3
2,189,309	+				-2.2
2,189,309	+				-2.3
2,189,309	+				-1.4
2,189,309	+				-1.5
2,189,310	-				+1.4
2,189,323	+				+1.2
2,189,323	+				-1.4
2,189,324	-				-1.0
2,189,324	-				-1.6
2,189,324	-				+0.4
2,189,324	-				-0.2
2,189,324	-				-0.7
2,189,324	-				-0.7
2,189,328	-				-0.4
2,189,377	+				+0.1
2,189,378	-				-1.0
2,189,392	-				+1.4
2,189,415	+				-0.2
2,189,415	+				+1.4
2,189,415	+				+2.4
2,189,415	+				-0.5
2,189,415	+				-1.4
2,189,415	+				-1.5
2,189,416	-				+2.2
2,189,416	-				+2.9
2,189,458	+		PFLU_RS09925	0.14	-1.3
2,189,458	+		PFLU_RS09925	0.14	+1.4
2,189,458	+		PFLU_RS09925	0.14	-1.2
2,189,459	-		PFLU_RS09925	0.15	-0.4
2,189,459	-		PFLU_RS09925	0.15	+2.9
2,189,459	-		PFLU_RS09925	0.15	-0.2
2,189,480	-		PFLU_RS09925	0.18	+1.1
2,189,480	-		PFLU_RS09925	0.18	+0.1
2,189,500	-		PFLU_RS09925	0.21	-0.2