Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14925

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
3,338,285	+		PFLU_RS14920	0.59	+1.0
3,338,286	-		PFLU_RS14920	0.59	-0.6
3,338,286	-		PFLU_RS14920	0.59	+0.4
3,338,333	+		PFLU_RS14920	0.62	-1.2
3,338,333	+		PFLU_RS14920	0.62	-0.9
3,338,333	+		PFLU_RS14920	0.62	-0.4
3,338,333	+		PFLU_RS14920	0.62	+0.4
3,338,387	+		PFLU_RS14920	0.65	-0.6
3,338,388	-		PFLU_RS14920	0.65	-1.0
3,338,388	-		PFLU_RS14920	0.65	+4.3
3,338,450	+		PFLU_RS14920	0.69	-0.1
3,338,451	-		PFLU_RS14920	0.69	+1.8
3,338,451	-		PFLU_RS14920	0.69	-0.6
3,338,451	-		PFLU_RS14920	0.69	+0.1
3,338,481	+		PFLU_RS14920	0.71	+2.0
3,338,482	-		PFLU_RS14920	0.71	+0.4
3,338,482	-		PFLU_RS14920	0.71	+2.7
3,338,529	+		PFLU_RS14920	0.74	-0.0
3,338,530	-		PFLU_RS14920	0.74	+1.8
3,338,530	-		PFLU_RS14920	0.74	-0.9
3,338,534	-		PFLU_RS14920	0.74	-1.6
3,338,583	+		PFLU_RS14920	0.77	-0.4
3,338,583	+		PFLU_RS14920	0.77	+3.5
3,338,614	+		PFLU_RS14920	0.79	-2.0
3,338,614	+		PFLU_RS14920	0.79	+5.0
3,338,657	+		PFLU_RS14920	0.81	-0.4
3,338,680	+		PFLU_RS14920	0.83	-2.9
3,338,680	+		PFLU_RS14920	0.83	-0.0
3,338,686	-		PFLU_RS14920	0.83	-2.3
3,338,686	-		PFLU_RS14920	0.83	+0.4
3,338,700	+		PFLU_RS14920	0.84	-0.0
3,338,701	-		PFLU_RS14920	0.84	-1.2
3,338,701	-		PFLU_RS14920	0.84	-1.0
3,338,701	-		PFLU_RS14920	0.84	+2.5
3,338,701	-		PFLU_RS14920	0.84	-0.4
3,338,701	-		PFLU_RS14920	0.84	-1.2
3,338,746	+		PFLU_RS14920	0.86	-0.0
3,338,747	-		PFLU_RS14920	0.87	+1.5
3,338,747	-		PFLU_RS14920	0.87	+0.4
3,338,769	+		PFLU_RS14920	0.88	+2.1
3,338,769	+		PFLU_RS14920	0.88	-1.2
3,338,781	-		PFLU_RS14920	0.89	+2.0
3,338,781	-		PFLU_RS14920	0.89	+2.2
3,338,882	+				+1.1
3,338,882	+				+2.0
3,338,883	-				-0.0
3,338,883	-				+0.4
3,338,921	+				-0.4
3,338,921	+				-1.5
3,338,922	-				-1.8
3,338,922	-				-2.2
3,338,922	-				-1.1
3,338,922	-				+2.6
3,338,936	+				+0.1
3,338,951	+				-0.4
3,338,952	-				-0.1
3,338,998	-				-0.6
3,339,070	+				-1.4
3,339,070	+				-2.4
3,339,071	-				+1.6
3,339,079	+				-1.4
3,339,079	+				-0.2
3,339,079	+				+0.4
3,339,079	+				-0.6
3,339,080	-				-1.5
3,339,080	-				-0.5
3,339,080	-				-0.6
3,339,080	-				+0.9
3,339,089	+				+0.9
3,339,090	-				+1.9
3,339,090	-				-1.4
3,339,093	-				-0.9
3,339,093	-				-0.4
3,339,109	+				-2.1
3,339,127	+				-0.1
3,339,128	-				-2.5
3,339,128	-				-1.4
3,339,128	-				-1.5
3,339,128	-				-1.1
3,339,132	-				-0.4
3,339,132	-				+2.9
3,339,178	+		PFLU_RS14925	0.10	+1.9
3,339,179	-		PFLU_RS14925	0.10	+0.9
3,339,179	-		PFLU_RS14925	0.10	-1.8
3,339,227	+		PFLU_RS14925	0.14	-0.9
3,339,227	+		PFLU_RS14925	0.14	-1.4
3,339,227	+		PFLU_RS14925	0.14	+1.9
3,339,296	-		PFLU_RS14925	0.20	-0.1
3,339,301	+		PFLU_RS14925	0.20	-2.6
3,339,301	+		PFLU_RS14925	0.20	-0.6
3,339,301	+		PFLU_RS14925	0.20	-1.2
3,339,305	+		PFLU_RS14925	0.20	-0.6
3,339,305	+		PFLU_RS14925	0.20	+0.7
3,339,306	-		PFLU_RS14925	0.20	-0.1
3,339,306	-		PFLU_RS14925	0.20	-1.2
3,339,341	+		PFLU_RS14925	0.23	+0.4
3,339,345	+		PFLU_RS14925	0.23	-0.4
3,339,367	+		PFLU_RS14925	0.25	+1.9
3,339,367	+		PFLU_RS14925	0.25	+0.9
3,339,368	-		PFLU_RS14925	0.25	-2.0
3,339,368	-		PFLU_RS14925	0.25	-0.9
3,339,368	-		PFLU_RS14925	0.25	+1.9
3,339,383	+		PFLU_RS14925	0.26	+0.4
3,339,483	-		PFLU_RS14925	0.34	+0.2
3,339,499	+		PFLU_RS14925	0.36	-0.9
3,339,499	+		PFLU_RS14925	0.36	-2.2
3,339,499	+		PFLU_RS14925	0.36	+0.4
3,339,500	-		PFLU_RS14925	0.36	+2.9
3,339,534	+		PFLU_RS14925	0.39	+2.2
3,339,568	-		PFLU_RS14925	0.41	-1.4
3,339,568	-		PFLU_RS14925	0.41	-2.0
3,339,582	-		PFLU_RS14925	0.42	-0.6
3,339,582	-		PFLU_RS14925	0.42	-1.5
3,339,628	+		PFLU_RS14925	0.46	-0.1
3,339,659	-		PFLU_RS14925	0.48	-1.4
3,339,659	-		PFLU_RS14925	0.48	-0.8
3,339,673	+		PFLU_RS14925	0.50	-0.9
3,339,673	+		PFLU_RS14925	0.50	-2.1
3,339,673	+		PFLU_RS14925	0.50	-1.2
3,339,692	+		PFLU_RS14925	0.51	-0.4
3,339,692	+		PFLU_RS14925	0.51	+0.4
3,339,693	-		PFLU_RS14925	0.51	-0.9
3,339,764	-		PFLU_RS14925	0.57	+3.1
3,339,820	+		PFLU_RS14925	0.61	-1.1
3,339,820	+		PFLU_RS14925	0.61	-2.2
3,339,820	+		PFLU_RS14925	0.61	-2.1
3,339,820	+		PFLU_RS14925	0.61	+2.5
3,339,820	+		PFLU_RS14925	0.61	+2.5
3,339,821	-		PFLU_RS14925	0.61	+0.9
3,339,834	+		PFLU_RS14925	0.62	-0.9
3,339,850	+		PFLU_RS14925	0.64	+0.1
3,339,850	+		PFLU_RS14925	0.64	-0.4
3,339,851	-		PFLU_RS14925	0.64	-0.6
3,339,851	-		PFLU_RS14925	0.64	+0.9
3,339,886	+		PFLU_RS14925	0.67	+1.9
3,339,887	-		PFLU_RS14925	0.67	+1.9
3,339,887	-		PFLU_RS14925	0.67	-2.3
3,339,932	+		PFLU_RS14925	0.70	-0.6
3,339,933	-		PFLU_RS14925	0.70	-0.1
3,339,933	-		PFLU_RS14925	0.70	-0.1
3,339,978	+		PFLU_RS14925	0.74	+0.9
3,340,068	-		PFLU_RS14925	0.81	+1.5
3,340,183	+				+1.6
3,340,183	+				+0.9
3,340,184	-				-2.5
3,340,184	-				-0.4
3,340,194	+				+1.7
3,340,224	-				-0.9
3,340,224	-				-1.7
3,340,326	+				+0.9
3,340,326	+				-0.2
3,340,330	+				+3.8
3,340,433	+				-2.0
3,340,636	+		PFLU_RS14930	0.18	-0.4
3,340,637	-		PFLU_RS14930	0.18	-2.2
3,340,637	-		PFLU_RS14930	0.18	+1.8
3,340,640	+		PFLU_RS14930	0.19	-2.1
3,340,640	+		PFLU_RS14930	0.19	+2.4
3,340,640	+		PFLU_RS14930	0.19	-1.5
3,340,640	+		PFLU_RS14930	0.19	+0.9
3,340,640	+		PFLU_RS14930	0.19	+0.4
3,340,640	+		PFLU_RS14930	0.19	+0.4
3,340,640	+		PFLU_RS14930	0.19	+2.1
3,340,640	+		PFLU_RS14930	0.19	-0.1
3,340,641	-		PFLU_RS14930	0.19	+1.7
3,340,641	-		PFLU_RS14930	0.19	+0.4
3,340,641	-		PFLU_RS14930	0.19	-0.4
3,340,641	-		PFLU_RS14930	0.19	-0.6
3,340,641	-		PFLU_RS14930	0.19	+3.4
3,340,641	-		PFLU_RS14930	0.19	-0.4
3,340,641	-		PFLU_RS14930	0.19	-1.8
3,340,653	+		PFLU_RS14930	0.20	-3.7
3,340,653	+		PFLU_RS14930	0.20	+0.9
3,340,654	-		PFLU_RS14930	0.20	+0.8
3,340,654	-		PFLU_RS14930	0.20	+0.4
3,340,654	-		PFLU_RS14930	0.20	-0.9
3,340,654	-		PFLU_RS14930	0.20	-0.4
3,340,656	+		PFLU_RS14930	0.20	+2.1
3,340,656	+		PFLU_RS14930	0.20	-1.1
3,340,656	+		PFLU_RS14930	0.20	+0.4
3,340,657	-		PFLU_RS14930	0.20	-1.2
3,340,657	-		PFLU_RS14930	0.20	+1.9
3,340,657	-		PFLU_RS14930	0.20	-0.1
3,340,657	-		PFLU_RS14930	0.20	+1.6
3,340,657	-		PFLU_RS14930	0.20	+1.9
3,340,657	-		PFLU_RS14930	0.20	+0.6
3,340,657	-		PFLU_RS14930	0.20	+0.9
3,340,657	-		PFLU_RS14930	0.20	-1.2
3,340,657	-		PFLU_RS14930	0.20	+1.3
3,340,657	-		PFLU_RS14930	0.20	+0.4
3,340,657	-		PFLU_RS14930	0.20	+1.4
3,340,657	-		PFLU_RS14930	0.20	+3.3
3,340,706	+		PFLU_RS14930	0.24	+5.5
3,340,707	-		PFLU_RS14930	0.24	+1.5
3,340,707	-		PFLU_RS14930	0.24	-0.6
3,340,709	+		PFLU_RS14930	0.24	-0.9
3,340,710	-		PFLU_RS14930	0.24	-0.1
3,340,893	+		PFLU_RS14930	0.38	-1.2
3,340,894	-		PFLU_RS14930	0.38	+1.9
3,341,002	-		PFLU_RS14930	0.46	-0.9
3,341,002	-		PFLU_RS14930	0.46	-0.1
3,341,002	-		PFLU_RS14930	0.46	+0.4
3,341,052	+		PFLU_RS14930	0.50	+2.9
3,341,052	+		PFLU_RS14930	0.50	+1.4
3,341,052	+		PFLU_RS14930	0.50	+0.4
3,341,053	-		PFLU_RS14930	0.50	+1.5
3,341,053	-		PFLU_RS14930	0.50	-0.9
3,341,098	+		PFLU_RS14930	0.54	-0.4
3,341,257	+		PFLU_RS14930	0.66	+1.8
3,341,258	-		PFLU_RS14930	0.66	-2.9