Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17280

Experiment: LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17275 and BWI76_RS17280 are separated by 89 nucleotidesBWI76_RS17280 and BWI76_RS17285 are separated by 112 nucleotidesBWI76_RS17285 and BWI76_RS17290 are separated by 42 nucleotides BWI76_RS17275: BWI76_RS17275 - two-component system response regulator RssB, at 3,579,844 to 3,580,857 _RS17275 BWI76_RS17280: BWI76_RS17280 - patatin family protein, at 3,580,947 to 3,581,846 _RS17280 BWI76_RS17285: BWI76_RS17285 - hypothetical protein, at 3,581,959 to 3,582,417 _RS17285 BWI76_RS17290: BWI76_RS17290 - formyltetrahydrofolate deformylase, at 3,582,460 to 3,583,302 _RS17290 Position (kb) 3580 3581 3582Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3579.992 kb on + strand, within BWI76_RS17275at 3579.992 kb on + strand, within BWI76_RS17275at 3580.000 kb on - strandat 3580.000 kb on - strand, within BWI76_RS17275at 3580.000 kb on - strand, within BWI76_RS17275at 3580.022 kb on - strand, within BWI76_RS17275at 3580.061 kb on - strand, within BWI76_RS17275at 3580.088 kb on + strand, within BWI76_RS17275at 3580.096 kb on - strand, within BWI76_RS17275at 3580.117 kb on - strand, within BWI76_RS17275at 3580.140 kb on - strand, within BWI76_RS17275at 3580.142 kb on + strand, within BWI76_RS17275at 3580.142 kb on + strand, within BWI76_RS17275at 3580.150 kb on - strand, within BWI76_RS17275at 3580.150 kb on - strand, within BWI76_RS17275at 3580.150 kb on - strand, within BWI76_RS17275at 3580.150 kb on - strand, within BWI76_RS17275at 3580.184 kb on + strand, within BWI76_RS17275at 3580.184 kb on + strand, within BWI76_RS17275at 3580.184 kb on + strand, within BWI76_RS17275at 3580.184 kb on + strand, within BWI76_RS17275at 3580.192 kb on - strand, within BWI76_RS17275at 3580.192 kb on - strand, within BWI76_RS17275at 3580.192 kb on - strand, within BWI76_RS17275at 3580.219 kb on - strand, within BWI76_RS17275at 3580.299 kb on - strand, within BWI76_RS17275at 3580.301 kb on + strand, within BWI76_RS17275at 3580.373 kb on + strand, within BWI76_RS17275at 3580.383 kb on + strand, within BWI76_RS17275at 3580.400 kb on - strand, within BWI76_RS17275at 3580.400 kb on - strand, within BWI76_RS17275at 3580.569 kb on + strand, within BWI76_RS17275at 3580.786 kb on + strandat 3580.794 kb on - strandat 3580.794 kb on - strandat 3580.868 kb on - strandat 3580.868 kb on - strandat 3580.898 kb on + strandat 3580.904 kb on + strandat 3580.949 kb on + strandat 3580.949 kb on + strandat 3580.957 kb on - strandat 3580.977 kb on - strandat 3581.020 kb on + strandat 3581.114 kb on - strand, within BWI76_RS17280at 3581.423 kb on + strand, within BWI76_RS17280at 3581.423 kb on + strand, within BWI76_RS17280at 3581.581 kb on - strand, within BWI76_RS17280at 3581.997 kb on - strandat 3582.047 kb on + strand, within BWI76_RS17285at 3582.105 kb on + strand, within BWI76_RS17285at 3582.151 kb on + strand, within BWI76_RS17285at 3582.182 kb on + strand, within BWI76_RS17285at 3582.221 kb on + strand, within BWI76_RS17285at 3582.270 kb on - strand, within BWI76_RS17285at 3582.321 kb on + strand, within BWI76_RS17285at 3582.321 kb on + strand, within BWI76_RS17285at 3582.482 kb on - strandat 3582.500 kb on - strandat 3582.663 kb on - strand, within BWI76_RS17290at 3582.663 kb on - strandat 3582.706 kb on - strand, within BWI76_RS17290at 3582.763 kb on - strand, within BWI76_RS17290

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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3,579,992 + BWI76_RS17275 0.15 -2.6
3,579,992 + BWI76_RS17275 0.15 -0.1
3,580,000 - -0.7
3,580,000 - BWI76_RS17275 0.15 +0.0
3,580,000 - BWI76_RS17275 0.15 -2.2
3,580,022 - BWI76_RS17275 0.18 -0.2
3,580,061 - BWI76_RS17275 0.21 +0.3
3,580,088 + BWI76_RS17275 0.24 +1.4
3,580,096 - BWI76_RS17275 0.25 +0.8
3,580,117 - BWI76_RS17275 0.27 +1.9
3,580,140 - BWI76_RS17275 0.29 +1.2
3,580,142 + BWI76_RS17275 0.29 +0.2
3,580,142 + BWI76_RS17275 0.29 +0.8
3,580,150 - BWI76_RS17275 0.30 +0.2
3,580,150 - BWI76_RS17275 0.30 -0.5
3,580,150 - BWI76_RS17275 0.30 -0.1
3,580,150 - BWI76_RS17275 0.30 -0.4
3,580,184 + BWI76_RS17275 0.34 +0.6
3,580,184 + BWI76_RS17275 0.34 -0.1
3,580,184 + BWI76_RS17275 0.34 -1.7
3,580,184 + BWI76_RS17275 0.34 +0.6
3,580,192 - BWI76_RS17275 0.34 -0.2
3,580,192 - BWI76_RS17275 0.34 +1.0
3,580,192 - BWI76_RS17275 0.34 +0.9
3,580,219 - BWI76_RS17275 0.37 +0.1
3,580,299 - BWI76_RS17275 0.45 -1.1
3,580,301 + BWI76_RS17275 0.45 +0.5
3,580,373 + BWI76_RS17275 0.52 +0.4
3,580,383 + BWI76_RS17275 0.53 +1.6
3,580,400 - BWI76_RS17275 0.55 +0.7
3,580,400 - BWI76_RS17275 0.55 -0.1
3,580,569 + BWI76_RS17275 0.71 -0.2
3,580,786 + +0.1
3,580,794 - -0.1
3,580,794 - -0.9
3,580,868 - +0.3
3,580,868 - +0.5
3,580,898 + +0.6
3,580,904 + -0.9
3,580,949 + +0.6
3,580,949 + -1.3
3,580,957 - -0.0
3,580,977 - +1.0
3,581,020 + -0.4
3,581,114 - BWI76_RS17280 0.19 -3.2
3,581,423 + BWI76_RS17280 0.53 +0.3
3,581,423 + BWI76_RS17280 0.53 -1.0
3,581,581 - BWI76_RS17280 0.70 -0.2
3,581,997 - -0.6
3,582,047 + BWI76_RS17285 0.19 -0.3
3,582,105 + BWI76_RS17285 0.32 +1.2
3,582,151 + BWI76_RS17285 0.42 +1.2
3,582,182 + BWI76_RS17285 0.49 -0.9
3,582,221 + BWI76_RS17285 0.57 +0.2
3,582,270 - BWI76_RS17285 0.68 -1.7
3,582,321 + BWI76_RS17285 0.79 -1.1
3,582,321 + BWI76_RS17285 0.79 +0.3
3,582,482 - +0.2
3,582,500 - +0.7
3,582,663 - BWI76_RS17290 0.24 -1.7
3,582,663 - -0.1
3,582,706 - BWI76_RS17290 0.29 -0.9
3,582,763 - BWI76_RS17290 0.36 +0.4

Or see this region's nucleotide sequence