Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13715

Experiment: LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13705 and BWI76_RS13710 overlap by 1 nucleotidesBWI76_RS13710 and BWI76_RS13715 are separated by 9 nucleotidesBWI76_RS13715 and BWI76_RS13720 are separated by 9 nucleotidesBWI76_RS13720 and BWI76_RS13725 overlap by 4 nucleotides BWI76_RS13705: BWI76_RS13705 - Rieske (2Fe-2S) domain-containing protein, at 2,859,559 to 2,860,941 _RS13705 BWI76_RS13710: BWI76_RS13710 - benzoate 1,2-dioxygenase small subunit, at 2,860,941 to 2,861,426 _RS13710 BWI76_RS13715: BWI76_RS13715 - 2-chlorobenzoate 1 2-dioxygenase electron transfer subunit, at 2,861,436 to 2,862,452 _RS13715 BWI76_RS13720: BWI76_RS13720 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase, at 2,862,462 to 2,863,235 _RS13720 BWI76_RS13725: BWI76_RS13725 - aromatic amino acid exporter, at 2,863,232 to 2,864,110 _RS13725 Position (kb) 2861 2862 2863Strain fitness (log2 ratio) -2 -1 0 1at 2860.680 kb on + strand, within BWI76_RS13705at 2860.833 kb on + strandat 2860.933 kb on - strandat 2861.043 kb on + strand, within BWI76_RS13710at 2861.065 kb on - strand, within BWI76_RS13710at 2861.295 kb on - strand, within BWI76_RS13710at 2861.316 kb on - strand, within BWI76_RS13710at 2861.740 kb on - strand, within BWI76_RS13715at 2861.740 kb on - strand, within BWI76_RS13715at 2861.740 kb on - strand, within BWI76_RS13715at 2861.815 kb on - strand, within BWI76_RS13715at 2861.902 kb on + strand, within BWI76_RS13715at 2862.617 kb on - strand, within BWI76_RS13720at 2862.897 kb on + strand, within BWI76_RS13720at 2862.897 kb on + strand, within BWI76_RS13720at 2862.949 kb on + strandat 2863.137 kb on - strand, within BWI76_RS13720at 2863.254 kb on - strandat 2863.258 kb on + strandat 2863.322 kb on - strand, within BWI76_RS13725at 2863.322 kb on - strand, within BWI76_RS13725at 2863.424 kb on + strand, within BWI76_RS13725at 2863.437 kb on + strand, within BWI76_RS13725

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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2,860,680 + BWI76_RS13705 0.81 -0.4
2,860,833 + +1.0
2,860,933 - +0.1
2,861,043 + BWI76_RS13710 0.21 +0.2
2,861,065 - BWI76_RS13710 0.26 -0.7
2,861,295 - BWI76_RS13710 0.73 -0.3
2,861,316 - BWI76_RS13710 0.77 +1.3
2,861,740 - BWI76_RS13715 0.30 +0.6
2,861,740 - BWI76_RS13715 0.30 -1.6
2,861,740 - BWI76_RS13715 0.30 -0.6
2,861,815 - BWI76_RS13715 0.37 -1.4
2,861,902 + BWI76_RS13715 0.46 -0.1
2,862,617 - BWI76_RS13720 0.20 +0.7
2,862,897 + BWI76_RS13720 0.56 +0.3
2,862,897 + BWI76_RS13720 0.56 +0.4
2,862,949 + -1.4
2,863,137 - BWI76_RS13720 0.87 -2.2
2,863,254 - -0.7
2,863,258 + +0.3
2,863,322 - BWI76_RS13725 0.10 +1.1
2,863,322 - BWI76_RS13725 0.10 -0.1
2,863,424 + BWI76_RS13725 0.22 -0.3
2,863,437 + BWI76_RS13725 0.23 +0.1

Or see this region's nucleotide sequence