Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06840

Experiment: LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06835 and BWI76_RS06840 are separated by 176 nucleotidesBWI76_RS06840 and BWI76_RS06845 are separated by 127 nucleotides BWI76_RS06835: BWI76_RS06835 - molecular chaperone HtpG, at 1,433,098 to 1,434,972 _RS06835 BWI76_RS06840: BWI76_RS06840 - adenylate kinase, at 1,435,149 to 1,435,793 _RS06840 BWI76_RS06845: BWI76_RS06845 - ferrochelatase, at 1,435,921 to 1,436,883 _RS06845 Position (kb) 1435 1436Strain fitness (log2 ratio) -1 0 1at 1434.153 kb on + strand, within BWI76_RS06835at 1434.947 kb on + strandat 1434.985 kb on + strandat 1434.985 kb on + strandat 1434.991 kb on - strandat 1434.993 kb on - strandat 1434.993 kb on - strandat 1434.993 kb on - strandat 1435.869 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
remove
1,434,153 + BWI76_RS06835 0.56 +0.3
1,434,947 + -0.4
1,434,985 + +0.2
1,434,985 + +0.4
1,434,991 - -0.7
1,434,993 - +1.5
1,434,993 - +0.1
1,434,993 - +0.6
1,435,869 - -1.3

Or see this region's nucleotide sequence