Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03565

Experiment: LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03555 and BWI76_RS03560 are separated by 12 nucleotidesBWI76_RS03560 and BWI76_RS03565 overlap by 4 nucleotidesBWI76_RS03565 and BWI76_RS03570 are separated by 12 nucleotides BWI76_RS03555: BWI76_RS03555 - hypothetical protein, at 736,684 to 737,385 _RS03555 BWI76_RS03560: BWI76_RS03560 - propanediol utilization phosphotransacylase, at 737,398 to 738,018 _RS03560 BWI76_RS03565: BWI76_RS03565 - BMC domain-containing protein, at 738,015 to 738,443 _RS03565 BWI76_RS03570: BWI76_RS03570 - choline TMA-lyase-activating enzyme, at 738,456 to 739,397 _RS03570 Position (kb) 738 739Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 737.080 kb on - strand, within BWI76_RS03555at 737.148 kb on + strand, within BWI76_RS03555at 737.150 kb on + strand, within BWI76_RS03555at 737.150 kb on + strand, within BWI76_RS03555at 737.244 kb on + strand, within BWI76_RS03555at 737.325 kb on - strandat 737.408 kb on + strandat 737.746 kb on - strand, within BWI76_RS03560at 737.830 kb on + strand, within BWI76_RS03560at 737.830 kb on + strand, within BWI76_RS03560at 737.838 kb on - strand, within BWI76_RS03560at 737.838 kb on - strand, within BWI76_RS03560at 737.890 kb on - strand, within BWI76_RS03560at 738.014 kb on - strandat 738.029 kb on - strandat 738.092 kb on + strand, within BWI76_RS03565at 738.179 kb on - strand, within BWI76_RS03565at 738.179 kb on - strand, within BWI76_RS03565at 738.209 kb on + strand, within BWI76_RS03565at 738.229 kb on + strand, within BWI76_RS03565at 738.292 kb on + strand, within BWI76_RS03565at 738.357 kb on + strand, within BWI76_RS03565at 738.393 kb on - strand, within BWI76_RS03565at 738.513 kb on + strandat 738.513 kb on + strandat 738.513 kb on + strandat 738.513 kb on + strandat 738.521 kb on - strandat 738.553 kb on + strand, within BWI76_RS03570at 738.553 kb on + strand, within BWI76_RS03570at 738.561 kb on - strand, within BWI76_RS03570at 738.561 kb on - strand, within BWI76_RS03570at 738.592 kb on + strand, within BWI76_RS03570at 738.596 kb on + strand, within BWI76_RS03570at 738.604 kb on - strand, within BWI76_RS03570at 738.676 kb on + strand, within BWI76_RS03570at 738.697 kb on - strandat 738.744 kb on - strand, within BWI76_RS03570at 738.748 kb on + strand, within BWI76_RS03570at 738.757 kb on - strand, within BWI76_RS03570at 738.757 kb on - strand, within BWI76_RS03570at 738.801 kb on - strand, within BWI76_RS03570at 738.846 kb on - strand, within BWI76_RS03570at 738.846 kb on - strand, within BWI76_RS03570at 738.875 kb on + strand, within BWI76_RS03570at 738.880 kb on + strand, within BWI76_RS03570at 738.886 kb on - strand, within BWI76_RS03570at 738.904 kb on + strand, within BWI76_RS03570at 738.904 kb on + strand, within BWI76_RS03570at 738.909 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.945 kb on + strand, within BWI76_RS03570at 738.962 kb on + strand, within BWI76_RS03570at 738.962 kb on + strand, within BWI76_RS03570at 739.028 kb on - strand, within BWI76_RS03570at 739.043 kb on - strand, within BWI76_RS03570at 739.066 kb on - strand, within BWI76_RS03570at 739.098 kb on - strand, within BWI76_RS03570at 739.098 kb on - strand, within BWI76_RS03570at 739.098 kb on - strand, within BWI76_RS03570at 739.099 kb on + strand, within BWI76_RS03570at 739.113 kb on - strand, within BWI76_RS03570at 739.195 kb on - strand, within BWI76_RS03570at 739.199 kb on + strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.207 kb on - strand, within BWI76_RS03570at 739.233 kb on - strand, within BWI76_RS03570at 739.233 kb on - strand, within BWI76_RS03570at 739.246 kb on + strand, within BWI76_RS03570at 739.267 kb on + strand, within BWI76_RS03570at 739.268 kb on - strand, within BWI76_RS03570at 739.275 kb on - strand, within BWI76_RS03570at 739.275 kb on - strand, within BWI76_RS03570at 739.275 kb on - strand, within BWI76_RS03570at 739.275 kb on - strand, within BWI76_RS03570at 739.275 kb on - strand, within BWI76_RS03570at 739.417 kb on + strandat 739.421 kb on + strandat 739.421 kb on + strandat 739.426 kb on + strandat 739.426 kb on + strandat 739.426 kb on + strandat 739.429 kb on - strandat 739.434 kb on - strandat 739.434 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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737,080 - BWI76_RS03555 0.56 +0.7
737,148 + BWI76_RS03555 0.66 -0.3
737,150 + BWI76_RS03555 0.66 +0.3
737,150 + BWI76_RS03555 0.66 +0.0
737,244 + BWI76_RS03555 0.80 -0.0
737,325 - +0.7
737,408 + +0.2
737,746 - BWI76_RS03560 0.56 +1.3
737,830 + BWI76_RS03560 0.70 +0.3
737,830 + BWI76_RS03560 0.70 +0.3
737,838 - BWI76_RS03560 0.71 +2.6
737,838 - BWI76_RS03560 0.71 +0.2
737,890 - BWI76_RS03560 0.79 +1.4
738,014 - +0.2
738,029 - +1.3
738,092 + BWI76_RS03565 0.18 -0.9
738,179 - BWI76_RS03565 0.38 +0.4
738,179 - BWI76_RS03565 0.38 -1.1
738,209 + BWI76_RS03565 0.45 +0.2
738,229 + BWI76_RS03565 0.50 -0.2
738,292 + BWI76_RS03565 0.65 +0.7
738,357 + BWI76_RS03565 0.80 -1.5
738,393 - BWI76_RS03565 0.88 -0.1
738,513 + -0.1
738,513 + +0.6
738,513 + +0.5
738,513 + +0.9
738,521 - -0.1
738,553 + BWI76_RS03570 0.10 +0.0
738,553 + BWI76_RS03570 0.10 +0.8
738,561 - BWI76_RS03570 0.11 -3.4
738,561 - BWI76_RS03570 0.11 -0.1
738,592 + BWI76_RS03570 0.14 +0.4
738,596 + BWI76_RS03570 0.15 +1.0
738,604 - BWI76_RS03570 0.16 +0.4
738,676 + BWI76_RS03570 0.23 -0.1
738,697 - +3.8
738,744 - BWI76_RS03570 0.31 -0.5
738,748 + BWI76_RS03570 0.31 -1.9
738,757 - BWI76_RS03570 0.32 +0.2
738,757 - BWI76_RS03570 0.32 +0.8
738,801 - BWI76_RS03570 0.37 -0.4
738,846 - BWI76_RS03570 0.41 -0.7
738,846 - BWI76_RS03570 0.41 +0.1
738,875 + BWI76_RS03570 0.44 -2.0
738,880 + BWI76_RS03570 0.45 -0.3
738,886 - BWI76_RS03570 0.46 -1.1
738,904 + BWI76_RS03570 0.48 +1.2
738,904 + BWI76_RS03570 0.48 +0.5
738,909 - BWI76_RS03570 0.48 +1.2
738,912 - BWI76_RS03570 0.48 +0.2
738,912 - BWI76_RS03570 0.48 +1.3
738,912 - BWI76_RS03570 0.48 -0.2
738,912 - BWI76_RS03570 0.48 +0.5
738,945 + BWI76_RS03570 0.52 +0.2
738,962 + BWI76_RS03570 0.54 +0.0
738,962 + BWI76_RS03570 0.54 -1.0
739,028 - BWI76_RS03570 0.61 +0.3
739,043 - BWI76_RS03570 0.62 +0.3
739,066 - BWI76_RS03570 0.65 -0.3
739,098 - BWI76_RS03570 0.68 +0.4
739,098 - BWI76_RS03570 0.68 -0.2
739,098 - BWI76_RS03570 0.68 -0.3
739,099 + BWI76_RS03570 0.68 +0.8
739,113 - BWI76_RS03570 0.70 -0.9
739,195 - BWI76_RS03570 0.78 +1.0
739,199 + BWI76_RS03570 0.79 +0.3
739,207 - BWI76_RS03570 0.80 -1.3
739,207 - BWI76_RS03570 0.80 -0.1
739,207 - BWI76_RS03570 0.80 +0.5
739,207 - BWI76_RS03570 0.80 +0.3
739,207 - BWI76_RS03570 0.80 -0.6
739,207 - BWI76_RS03570 0.80 -1.1
739,207 - BWI76_RS03570 0.80 +0.5
739,233 - BWI76_RS03570 0.82 -1.1
739,233 - BWI76_RS03570 0.82 -0.6
739,246 + BWI76_RS03570 0.84 -0.5
739,267 + BWI76_RS03570 0.86 +0.7
739,268 - BWI76_RS03570 0.86 +1.2
739,275 - BWI76_RS03570 0.87 +0.9
739,275 - BWI76_RS03570 0.87 +0.3
739,275 - BWI76_RS03570 0.87 +0.6
739,275 - BWI76_RS03570 0.87 -1.3
739,275 - BWI76_RS03570 0.87 +0.1
739,417 + +0.4
739,421 + -0.7
739,421 + -2.1
739,426 + -0.7
739,426 + -1.8
739,426 + +1.0
739,429 - +0.7
739,434 - -0.5
739,434 - +0.5

Or see this region's nucleotide sequence