Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02805

Experiment: LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02800 and BWI76_RS02805 are separated by 10 nucleotidesBWI76_RS02805 and BWI76_RS02810 overlap by 14 nucleotides BWI76_RS02800: BWI76_RS02800 - ABC transporter, at 571,292 to 572,794 _RS02800 BWI76_RS02805: BWI76_RS02805 - sugar ABC transporter permease, at 572,805 to 573,830 _RS02805 BWI76_RS02810: BWI76_RS02810 - sugar ABC transporter permease YjfF, at 573,817 to 574,803 _RS02810 Position (kb) 572 573 574Strain fitness (log2 ratio) -2 -1 0 1 2at 571.814 kb on + strand, within BWI76_RS02800at 571.912 kb on + strand, within BWI76_RS02800at 571.912 kb on + strand, within BWI76_RS02800at 572.002 kb on + strand, within BWI76_RS02800at 572.058 kb on + strand, within BWI76_RS02800at 572.586 kb on + strand, within BWI76_RS02800at 572.633 kb on - strandat 572.689 kb on + strandat 572.739 kb on + strandat 572.865 kb on - strandat 573.046 kb on + strand, within BWI76_RS02805at 573.263 kb on + strand, within BWI76_RS02805at 573.268 kb on + strand, within BWI76_RS02805at 573.526 kb on + strand, within BWI76_RS02805at 573.558 kb on + strand, within BWI76_RS02805at 573.881 kb on - strandat 574.280 kb on - strand, within BWI76_RS02810at 574.280 kb on - strand, within BWI76_RS02810at 574.549 kb on - strand, within BWI76_RS02810at 574.598 kb on + strand, within BWI76_RS02810at 574.690 kb on - strand, within BWI76_RS02810

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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571,814 + BWI76_RS02800 0.35 +0.4
571,912 + BWI76_RS02800 0.41 +1.0
571,912 + BWI76_RS02800 0.41 -0.4
572,002 + BWI76_RS02800 0.47 -0.3
572,058 + BWI76_RS02800 0.51 +0.4
572,586 + BWI76_RS02800 0.86 +1.6
572,633 - +1.4
572,689 + +0.7
572,739 + +2.3
572,865 - -0.6
573,046 + BWI76_RS02805 0.23 -1.0
573,263 + BWI76_RS02805 0.45 +0.0
573,268 + BWI76_RS02805 0.45 -0.1
573,526 + BWI76_RS02805 0.70 -1.0
573,558 + BWI76_RS02805 0.73 -2.0
573,881 - +0.0
574,280 - BWI76_RS02810 0.47 -1.7
574,280 - BWI76_RS02810 0.47 +0.3
574,549 - BWI76_RS02810 0.74 -1.8
574,598 + BWI76_RS02810 0.79 +1.1
574,690 - BWI76_RS02810 0.88 -1.8

Or see this region's nucleotide sequence