Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02040

Experiment: LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02035 and BWI76_RS02040 are separated by 99 nucleotidesBWI76_RS02040 and BWI76_RS02045 are separated by 60 nucleotides BWI76_RS02035: BWI76_RS02035 - acetolactate synthase catalytic subunit, at 418,401 to 420,110 _RS02035 BWI76_RS02040: BWI76_RS02040 - aryl-alcohol dehydrogenase, at 420,210 to 421,337 _RS02040 BWI76_RS02045: BWI76_RS02045 - LysR family transcriptional regulator, at 421,398 to 422,294 _RS02045 Position (kb) 420 421 422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 419.223 kb on + strand, within BWI76_RS02035at 419.223 kb on + strand, within BWI76_RS02035at 419.282 kb on - strand, within BWI76_RS02035at 419.283 kb on + strand, within BWI76_RS02035at 419.309 kb on + strand, within BWI76_RS02035at 419.309 kb on + strand, within BWI76_RS02035at 419.337 kb on - strand, within BWI76_RS02035at 419.342 kb on + strand, within BWI76_RS02035at 419.342 kb on + strandat 419.350 kb on - strand, within BWI76_RS02035at 419.350 kb on - strand, within BWI76_RS02035at 419.358 kb on + strand, within BWI76_RS02035at 419.371 kb on + strand, within BWI76_RS02035at 419.371 kb on + strand, within BWI76_RS02035at 419.371 kb on + strand, within BWI76_RS02035at 419.376 kb on + strand, within BWI76_RS02035at 419.376 kb on + strand, within BWI76_RS02035at 419.377 kb on + strand, within BWI76_RS02035at 419.379 kb on - strand, within BWI76_RS02035at 419.379 kb on - strand, within BWI76_RS02035at 419.380 kb on - strand, within BWI76_RS02035at 419.390 kb on - strand, within BWI76_RS02035at 419.436 kb on - strand, within BWI76_RS02035at 419.463 kb on + strand, within BWI76_RS02035at 419.466 kb on + strand, within BWI76_RS02035at 419.471 kb on + strand, within BWI76_RS02035at 419.476 kb on + strand, within BWI76_RS02035at 419.479 kb on - strand, within BWI76_RS02035at 419.512 kb on + strand, within BWI76_RS02035at 419.519 kb on + strand, within BWI76_RS02035at 419.526 kb on - strand, within BWI76_RS02035at 419.527 kb on - strand, within BWI76_RS02035at 419.527 kb on - strand, within BWI76_RS02035at 419.532 kb on - strand, within BWI76_RS02035at 419.542 kb on + strand, within BWI76_RS02035at 419.550 kb on - strand, within BWI76_RS02035at 419.568 kb on - strand, within BWI76_RS02035at 419.572 kb on + strand, within BWI76_RS02035at 419.586 kb on - strand, within BWI76_RS02035at 419.607 kb on + strandat 419.632 kb on + strand, within BWI76_RS02035at 419.642 kb on - strand, within BWI76_RS02035at 419.685 kb on - strand, within BWI76_RS02035at 419.689 kb on + strand, within BWI76_RS02035at 419.693 kb on - strand, within BWI76_RS02035at 419.693 kb on - strand, within BWI76_RS02035at 419.695 kb on - strand, within BWI76_RS02035at 419.699 kb on + strand, within BWI76_RS02035at 419.699 kb on + strand, within BWI76_RS02035at 419.699 kb on + strand, within BWI76_RS02035at 419.706 kb on + strand, within BWI76_RS02035at 419.706 kb on + strand, within BWI76_RS02035at 419.707 kb on - strand, within BWI76_RS02035at 419.707 kb on - strand, within BWI76_RS02035at 419.707 kb on - strand, within BWI76_RS02035at 419.707 kb on - strand, within BWI76_RS02035at 419.707 kb on - strand, within BWI76_RS02035at 419.707 kb on - strand, within BWI76_RS02035at 419.707 kb on - strand, within BWI76_RS02035at 419.707 kb on - strand, within BWI76_RS02035at 419.707 kb on - strand, within BWI76_RS02035at 419.717 kb on - strand, within BWI76_RS02035at 419.725 kb on + strand, within BWI76_RS02035at 419.732 kb on - strand, within BWI76_RS02035at 419.732 kb on - strand, within BWI76_RS02035at 419.733 kb on - strand, within BWI76_RS02035at 419.784 kb on - strand, within BWI76_RS02035at 419.884 kb on + strand, within BWI76_RS02035at 419.977 kb on + strandat 419.982 kb on + strandat 419.982 kb on + strandat 420.009 kb on - strandat 420.023 kb on + strandat 420.066 kb on + strandat 420.094 kb on - strandat 420.174 kb on + strandat 420.239 kb on + strandat 420.247 kb on - strandat 420.247 kb on - strandat 420.306 kb on + strandat 420.350 kb on + strand, within BWI76_RS02040at 420.593 kb on - strand, within BWI76_RS02040at 420.600 kb on - strand, within BWI76_RS02040at 420.600 kb on - strand, within BWI76_RS02040at 420.688 kb on - strand, within BWI76_RS02040at 420.722 kb on + strand, within BWI76_RS02040at 420.773 kb on - strand, within BWI76_RS02040at 420.857 kb on + strand, within BWI76_RS02040at 420.899 kb on - strand, within BWI76_RS02040at 420.915 kb on + strand, within BWI76_RS02040at 421.033 kb on - strand, within BWI76_RS02040at 421.033 kb on - strand, within BWI76_RS02040at 421.118 kb on + strand, within BWI76_RS02040at 421.118 kb on + strand, within BWI76_RS02040at 421.149 kb on + strand, within BWI76_RS02040at 421.157 kb on - strand, within BWI76_RS02040at 421.157 kb on - strand, within BWI76_RS02040at 421.177 kb on - strand, within BWI76_RS02040at 421.212 kb on - strand, within BWI76_RS02040at 421.233 kb on - strandat 421.252 kb on - strandat 421.270 kb on + strandat 421.284 kb on + strandat 421.284 kb on + strandat 421.343 kb on + strandat 421.359 kb on - strandat 421.387 kb on - strandat 421.395 kb on + strandat 421.395 kb on + strandat 421.403 kb on - strandat 421.438 kb on + strandat 421.477 kb on - strandat 421.478 kb on - strandat 421.526 kb on - strand, within BWI76_RS02045at 421.540 kb on - strand, within BWI76_RS02045at 421.626 kb on - strand, within BWI76_RS02045at 421.950 kb on + strand, within BWI76_RS02045at 422.000 kb on + strand, within BWI76_RS02045at 422.148 kb on + strand, within BWI76_RS02045at 422.161 kb on - strand, within BWI76_RS02045at 422.308 kb on + strandat 422.316 kb on - strandat 422.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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419,223 + BWI76_RS02035 0.48 -0.8
419,223 + BWI76_RS02035 0.48 +0.4
419,282 - BWI76_RS02035 0.52 -1.7
419,283 + BWI76_RS02035 0.52 +0.1
419,309 + BWI76_RS02035 0.53 +0.8
419,309 + BWI76_RS02035 0.53 +0.8
419,337 - BWI76_RS02035 0.55 +0.5
419,342 + BWI76_RS02035 0.55 -1.3
419,342 + +0.7
419,350 - BWI76_RS02035 0.55 -0.1
419,350 - BWI76_RS02035 0.55 -1.3
419,358 + BWI76_RS02035 0.56 +1.3
419,371 + BWI76_RS02035 0.57 -1.7
419,371 + BWI76_RS02035 0.57 +1.4
419,371 + BWI76_RS02035 0.57 -0.0
419,376 + BWI76_RS02035 0.57 +0.4
419,376 + BWI76_RS02035 0.57 -1.0
419,377 + BWI76_RS02035 0.57 +0.3
419,379 - BWI76_RS02035 0.57 +0.9
419,379 - BWI76_RS02035 0.57 -4.1
419,380 - BWI76_RS02035 0.57 +0.5
419,390 - BWI76_RS02035 0.58 -0.2
419,436 - BWI76_RS02035 0.61 +2.7
419,463 + BWI76_RS02035 0.62 -2.6
419,466 + BWI76_RS02035 0.62 +1.3
419,471 + BWI76_RS02035 0.63 +0.3
419,476 + BWI76_RS02035 0.63 -2.2
419,479 - BWI76_RS02035 0.63 +0.6
419,512 + BWI76_RS02035 0.65 -1.3
419,519 + BWI76_RS02035 0.65 -0.5
419,526 - BWI76_RS02035 0.66 +1.1
419,527 - BWI76_RS02035 0.66 -2.8
419,527 - BWI76_RS02035 0.66 -0.2
419,532 - BWI76_RS02035 0.66 -0.3
419,542 + BWI76_RS02035 0.67 +1.6
419,550 - BWI76_RS02035 0.67 +0.1
419,568 - BWI76_RS02035 0.68 +0.3
419,572 + BWI76_RS02035 0.68 +0.5
419,586 - BWI76_RS02035 0.69 -1.3
419,607 + +0.3
419,632 + BWI76_RS02035 0.72 +0.5
419,642 - BWI76_RS02035 0.73 -0.4
419,685 - BWI76_RS02035 0.75 +0.8
419,689 + BWI76_RS02035 0.75 -0.9
419,693 - BWI76_RS02035 0.76 -0.5
419,693 - BWI76_RS02035 0.76 -0.6
419,695 - BWI76_RS02035 0.76 -0.8
419,699 + BWI76_RS02035 0.76 -0.2
419,699 + BWI76_RS02035 0.76 +0.9
419,699 + BWI76_RS02035 0.76 +0.2
419,706 + BWI76_RS02035 0.76 +0.2
419,706 + BWI76_RS02035 0.76 +1.0
419,707 - BWI76_RS02035 0.76 -0.3
419,707 - BWI76_RS02035 0.76 -0.7
419,707 - BWI76_RS02035 0.76 -0.5
419,707 - BWI76_RS02035 0.76 +0.5
419,707 - BWI76_RS02035 0.76 +0.6
419,707 - BWI76_RS02035 0.76 -2.9
419,707 - BWI76_RS02035 0.76 +0.6
419,707 - BWI76_RS02035 0.76 -1.6
419,707 - BWI76_RS02035 0.76 -0.6
419,717 - BWI76_RS02035 0.77 -1.7
419,725 + BWI76_RS02035 0.77 +0.4
419,732 - BWI76_RS02035 0.78 +0.6
419,732 - BWI76_RS02035 0.78 -0.4
419,733 - BWI76_RS02035 0.78 +0.4
419,784 - BWI76_RS02035 0.81 +1.7
419,884 + BWI76_RS02035 0.87 +0.5
419,977 + +0.9
419,982 + -0.3
419,982 + +0.1
420,009 - +0.1
420,023 + -0.3
420,066 + -0.1
420,094 - -0.3
420,174 + -0.6
420,239 + -2.0
420,247 - -0.3
420,247 - +0.9
420,306 + -2.3
420,350 + BWI76_RS02040 0.12 +0.4
420,593 - BWI76_RS02040 0.34 -1.8
420,600 - BWI76_RS02040 0.35 +1.6
420,600 - BWI76_RS02040 0.35 +0.2
420,688 - BWI76_RS02040 0.42 +0.5
420,722 + BWI76_RS02040 0.45 +1.4
420,773 - BWI76_RS02040 0.50 -0.2
420,857 + BWI76_RS02040 0.57 +0.6
420,899 - BWI76_RS02040 0.61 -0.4
420,915 + BWI76_RS02040 0.62 +0.4
421,033 - BWI76_RS02040 0.73 +0.4
421,033 - BWI76_RS02040 0.73 +1.0
421,118 + BWI76_RS02040 0.80 -0.7
421,118 + BWI76_RS02040 0.80 +0.3
421,149 + BWI76_RS02040 0.83 +0.1
421,157 - BWI76_RS02040 0.84 -0.3
421,157 - BWI76_RS02040 0.84 +1.0
421,177 - BWI76_RS02040 0.86 +0.4
421,212 - BWI76_RS02040 0.89 -1.0
421,233 - -0.4
421,252 - +0.6
421,270 + -1.0
421,284 + -2.4
421,284 + +0.4
421,343 + -0.9
421,359 - -0.6
421,387 - -0.1
421,395 + -2.0
421,395 + -1.1
421,403 - +0.3
421,438 + +0.3
421,477 - -0.9
421,478 - -1.7
421,526 - BWI76_RS02045 0.14 +1.3
421,540 - BWI76_RS02045 0.16 +0.9
421,626 - BWI76_RS02045 0.25 +1.9
421,950 + BWI76_RS02045 0.62 +0.3
422,000 + BWI76_RS02045 0.67 +1.3
422,148 + BWI76_RS02045 0.84 -3.2
422,161 - BWI76_RS02045 0.85 +0.4
422,308 + +0.7
422,316 - +0.1
422,316 - +0.2

Or see this region's nucleotide sequence