Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15905

Experiment: LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15895 and BWI76_RS15900 are separated by 208 nucleotidesBWI76_RS15900 and BWI76_RS15905 are separated by 136 nucleotidesBWI76_RS15905 and BWI76_RS15910 are separated by 60 nucleotidesBWI76_RS15910 and BWI76_RS15915 overlap by 7 nucleotides BWI76_RS15895: BWI76_RS15895 - starvation-sensing protein RspA, at 3,298,205 to 3,299,419 _RS15895 BWI76_RS15900: BWI76_RS15900 - hypothetical protein, at 3,299,628 to 3,299,953 _RS15900 BWI76_RS15905: BWI76_RS15905 - hypothetical protein, at 3,300,090 to 3,300,431 _RS15905 BWI76_RS15910: BWI76_RS15910 - spermidine acetyltransferase, at 3,300,492 to 3,301,052 _RS15910 BWI76_RS15915: BWI76_RS15915 - YnfC family lipoprotein, at 3,301,046 to 3,301,756 _RS15915 Position (kb) 3300 3301Strain fitness (log2 ratio) -1 0 1 2 3at 3299.171 kb on + strand, within BWI76_RS15895at 3299.265 kb on - strand, within BWI76_RS15895at 3299.275 kb on - strand, within BWI76_RS15895at 3299.327 kb on - strandat 3299.536 kb on - strandat 3299.569 kb on - strandat 3299.633 kb on - strandat 3299.744 kb on - strand, within BWI76_RS15900at 3299.781 kb on - strand, within BWI76_RS15900at 3300.394 kb on + strand, within BWI76_RS15905at 3300.402 kb on - strandat 3300.402 kb on - strandat 3300.545 kb on - strandat 3300.545 kb on - strandat 3300.847 kb on + strand, within BWI76_RS15910at 3301.015 kb on - strandat 3301.038 kb on + strandat 3301.082 kb on - strandat 3301.114 kb on - strandat 3301.123 kb on + strand, within BWI76_RS15915at 3301.234 kb on + strand, within BWI76_RS15915

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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3,299,171 + BWI76_RS15895 0.80 -1.3
3,299,265 - BWI76_RS15895 0.87 +0.6
3,299,275 - BWI76_RS15895 0.88 +0.4
3,299,327 - -1.3
3,299,536 - -0.1
3,299,569 - -1.2
3,299,633 - -0.2
3,299,744 - BWI76_RS15900 0.36 +0.1
3,299,781 - BWI76_RS15900 0.47 +1.7
3,300,394 + BWI76_RS15905 0.89 +1.3
3,300,402 - -0.7
3,300,402 - +0.1
3,300,545 - +0.2
3,300,545 - +0.4
3,300,847 + BWI76_RS15910 0.63 +1.3
3,301,015 - -0.7
3,301,038 + +0.3
3,301,082 - +2.9
3,301,114 - +0.8
3,301,123 + BWI76_RS15915 0.11 +0.9
3,301,234 + BWI76_RS15915 0.26 +0.6

Or see this region's nucleotide sequence