Experiment: LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02835 and BWI76_RS02840 are separated by 202 nucleotides BWI76_RS02840 and BWI76_RS02845 are separated by 620 nucleotides
BWI76_RS02835: BWI76_RS02835 - iron-containing alcohol dehydrogenase, at 579,704 to 580,846
_RS02835
BWI76_RS02840: BWI76_RS02840 - methylmalonate-semialdehyde dehydrogenase (CoA acylating), at 581,049 to 582,560
_RS02840
BWI76_RS02845: BWI76_RS02845 - hypothetical protein, at 583,181 to 583,732
_RS02845
Position (kb) 581
582
583 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 580.063 kb on + strand, within BWI76_RS02835 at 580.064 kb on + strand, within BWI76_RS02835 at 580.076 kb on - strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.088 kb on - strand, within BWI76_RS02835 at 580.095 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.113 kb on - strand, within BWI76_RS02835 at 580.113 kb on - strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.144 kb on + strand, within BWI76_RS02835 at 580.149 kb on + strand, within BWI76_RS02835 at 580.175 kb on + strand, within BWI76_RS02835 at 580.183 kb on - strand, within BWI76_RS02835 at 580.186 kb on + strand, within BWI76_RS02835 at 580.220 kb on + strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.254 kb on + strand, within BWI76_RS02835 at 580.262 kb on - strand, within BWI76_RS02835 at 580.267 kb on + strand, within BWI76_RS02835 at 580.268 kb on + strand, within BWI76_RS02835 at 580.268 kb on + strand, within BWI76_RS02835 at 580.268 kb on + strand, within BWI76_RS02835 at 580.275 kb on - strand, within BWI76_RS02835 at 580.277 kb on + strand, within BWI76_RS02835 at 580.277 kb on + strand, within BWI76_RS02835 at 580.359 kb on + strand, within BWI76_RS02835 at 580.414 kb on + strand, within BWI76_RS02835 at 580.441 kb on - strand, within BWI76_RS02835 at 580.477 kb on + strand, within BWI76_RS02835 at 580.558 kb on + strand, within BWI76_RS02835 at 580.565 kb on + strand, within BWI76_RS02835 at 580.566 kb on - strand, within BWI76_RS02835 at 580.566 kb on - strand, within BWI76_RS02835 at 580.566 kb on - strand at 580.566 kb on - strand, within BWI76_RS02835 at 580.579 kb on + strand at 580.584 kb on + strand, within BWI76_RS02835 at 580.584 kb on + strand, within BWI76_RS02835 at 580.587 kb on - strand, within BWI76_RS02835 at 580.592 kb on - strand, within BWI76_RS02835 at 580.593 kb on + strand, within BWI76_RS02835 at 580.601 kb on + strand, within BWI76_RS02835 at 580.601 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.612 kb on + strand at 580.612 kb on + strand, within BWI76_RS02835 at 580.612 kb on + strand, within BWI76_RS02835 at 580.612 kb on + strand, within BWI76_RS02835 at 580.613 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.632 kb on + strand, within BWI76_RS02835 at 580.632 kb on + strand, within BWI76_RS02835 at 580.640 kb on - strand, within BWI76_RS02835 at 580.653 kb on - strand, within BWI76_RS02835 at 580.658 kb on - strand, within BWI76_RS02835 at 580.658 kb on - strand, within BWI76_RS02835 at 580.707 kb on + strand, within BWI76_RS02835 at 580.707 kb on + strand, within BWI76_RS02835 at 580.715 kb on - strand, within BWI76_RS02835 at 580.715 kb on - strand, within BWI76_RS02835 at 580.740 kb on - strand at 580.779 kb on + strand at 580.779 kb on + strand at 580.785 kb on - strand at 580.785 kb on - strand at 580.787 kb on - strand at 580.787 kb on - strand at 580.787 kb on - strand at 580.789 kb on + strand at 580.818 kb on - strand at 580.818 kb on - strand at 580.825 kb on + strand at 580.830 kb on + strand at 580.833 kb on - strand at 580.833 kb on - strand at 580.835 kb on + strand at 580.835 kb on + strand at 580.835 kb on + strand at 580.836 kb on + strand at 580.836 kb on + strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.849 kb on - strand at 580.904 kb on + strand at 580.968 kb on - strand at 581.015 kb on - strand at 581.060 kb on + strand at 581.061 kb on + strand at 581.062 kb on + strand at 581.062 kb on + strand at 581.070 kb on - strand at 581.075 kb on - strand at 581.094 kb on + strand at 581.099 kb on + strand at 581.099 kb on + strand at 581.099 kb on + strand at 581.099 kb on + strand at 581.102 kb on - strand at 581.104 kb on + strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.109 kb on + strand at 581.117 kb on - strand at 581.132 kb on - strand at 581.134 kb on + strand at 581.136 kb on + strand at 581.142 kb on - strand at 581.142 kb on - strand at 581.152 kb on + strand at 581.159 kb on - strand at 581.159 kb on - strand at 581.159 kb on - strand at 581.159 kb on - strand at 581.164 kb on - strand at 581.164 kb on - strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.169 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.179 kb on + strand at 581.187 kb on - strand at 581.197 kb on - strand at 581.197 kb on - strand at 581.215 kb on - strand, within BWI76_RS02840 at 581.306 kb on + strand, within BWI76_RS02840 at 581.309 kb on + strand, within BWI76_RS02840 at 581.365 kb on + strand, within BWI76_RS02840 at 581.375 kb on + strand, within BWI76_RS02840 at 581.375 kb on + strand, within BWI76_RS02840 at 581.380 kb on + strand, within BWI76_RS02840 at 581.380 kb on + strand, within BWI76_RS02840 at 581.382 kb on + strand, within BWI76_RS02840 at 581.382 kb on + strand, within BWI76_RS02840 at 581.383 kb on - strand, within BWI76_RS02840 at 581.388 kb on - strand, within BWI76_RS02840 at 581.390 kb on - strand, within BWI76_RS02840 at 581.390 kb on - strand, within BWI76_RS02840 at 581.390 kb on - strand, within BWI76_RS02840 at 581.429 kb on - strand, within BWI76_RS02840 at 581.452 kb on - strand, within BWI76_RS02840 at 581.461 kb on - strand, within BWI76_RS02840 at 581.506 kb on + strand, within BWI76_RS02840 at 581.509 kb on - strand, within BWI76_RS02840 at 581.514 kb on - strand, within BWI76_RS02840 at 581.525 kb on + strand, within BWI76_RS02840 at 581.533 kb on - strand, within BWI76_RS02840 at 581.555 kb on - strand, within BWI76_RS02840 at 581.562 kb on + strand, within BWI76_RS02840 at 581.570 kb on - strand, within BWI76_RS02840 at 581.588 kb on - strand, within BWI76_RS02840 at 581.699 kb on + strand, within BWI76_RS02840 at 581.709 kb on + strand, within BWI76_RS02840 at 581.709 kb on - strand, within BWI76_RS02840 at 581.775 kb on + strand, within BWI76_RS02840 at 581.847 kb on - strand, within BWI76_RS02840 at 581.883 kb on + strand, within BWI76_RS02840 at 581.948 kb on - strand, within BWI76_RS02840 at 581.971 kb on + strand, within BWI76_RS02840 at 582.007 kb on - strand, within BWI76_RS02840 at 582.014 kb on - strand, within BWI76_RS02840 at 582.022 kb on - strand, within BWI76_RS02840 at 582.022 kb on - strand, within BWI76_RS02840 at 582.142 kb on + strand, within BWI76_RS02840 at 582.167 kb on - strand, within BWI76_RS02840 at 582.216 kb on + strand, within BWI76_RS02840 at 582.382 kb on - strand, within BWI76_RS02840 at 582.402 kb on - strand, within BWI76_RS02840 at 582.433 kb on - strand at 582.436 kb on + strand at 582.436 kb on + strand at 582.436 kb on + strand at 582.436 kb on + strand at 582.455 kb on - strand at 582.455 kb on - strand at 582.475 kb on + strand at 582.484 kb on - strand at 582.487 kb on + strand at 582.524 kb on - strand at 582.548 kb on + strand at 582.573 kb on + strand at 582.608 kb on + strand at 582.616 kb on + strand at 582.676 kb on + strand at 582.731 kb on - strand at 582.963 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 580,063 + BWI76_RS02835 0.31 -0.2 580,064 + BWI76_RS02835 0.31 -2.2 580,076 - BWI76_RS02835 0.33 -0.7 580,080 + BWI76_RS02835 0.33 -1.0 580,080 + BWI76_RS02835 0.33 +2.2 580,080 + BWI76_RS02835 0.33 -0.2 580,080 + BWI76_RS02835 0.33 -0.1 580,088 - BWI76_RS02835 0.34 +0.6 580,095 + BWI76_RS02835 0.34 +0.2 580,105 + BWI76_RS02835 0.35 +1.7 580,105 + BWI76_RS02835 0.35 +0.5 580,105 + BWI76_RS02835 0.35 -1.5 580,105 + BWI76_RS02835 0.35 +2.7 580,113 - BWI76_RS02835 0.36 -0.7 580,113 - BWI76_RS02835 0.36 +0.2 580,118 + BWI76_RS02835 0.36 -0.6 580,118 + BWI76_RS02835 0.36 +2.8 580,118 + BWI76_RS02835 0.36 +1.2 580,118 + BWI76_RS02835 0.36 -0.5 580,126 - BWI76_RS02835 0.37 -0.0 580,126 - BWI76_RS02835 0.37 -0.4 580,126 - BWI76_RS02835 0.37 -2.1 580,126 - BWI76_RS02835 0.37 +1.5 580,144 + BWI76_RS02835 0.38 +0.2 580,149 + BWI76_RS02835 0.39 +0.5 580,175 + BWI76_RS02835 0.41 +0.8 580,183 - BWI76_RS02835 0.42 -0.5 580,186 + BWI76_RS02835 0.42 +0.5 580,220 + BWI76_RS02835 0.45 +0.5 580,252 - BWI76_RS02835 0.48 -0.8 580,252 - BWI76_RS02835 0.48 -2.5 580,252 - BWI76_RS02835 0.48 +0.9 580,252 - BWI76_RS02835 0.48 +0.8 580,252 - BWI76_RS02835 0.48 +0.7 580,254 + BWI76_RS02835 0.48 -0.3 580,262 - BWI76_RS02835 0.49 -1.2 580,267 + BWI76_RS02835 0.49 +0.9 580,268 + BWI76_RS02835 0.49 +1.4 580,268 + BWI76_RS02835 0.49 +0.4 580,268 + BWI76_RS02835 0.49 -1.3 580,275 - BWI76_RS02835 0.50 -1.1 580,277 + BWI76_RS02835 0.50 +0.4 580,277 + BWI76_RS02835 0.50 +0.5 580,359 + BWI76_RS02835 0.57 +0.3 580,414 + BWI76_RS02835 0.62 +0.1 580,441 - BWI76_RS02835 0.64 +0.1 580,477 + BWI76_RS02835 0.68 +0.7 580,558 + BWI76_RS02835 0.75 -1.0 580,565 + BWI76_RS02835 0.75 +0.5 580,566 - BWI76_RS02835 0.75 -1.6 580,566 - BWI76_RS02835 0.75 +0.8 580,566 - -0.1 580,566 - BWI76_RS02835 0.75 -0.4 580,579 + +1.5 580,584 + BWI76_RS02835 0.77 +0.9 580,584 + BWI76_RS02835 0.77 +0.8 580,587 - BWI76_RS02835 0.77 +2.5 580,592 - BWI76_RS02835 0.78 -0.8 580,593 + BWI76_RS02835 0.78 -1.8 580,601 + BWI76_RS02835 0.78 -0.4 580,601 - BWI76_RS02835 0.78 -0.2 580,602 - BWI76_RS02835 0.79 +1.5 580,602 - BWI76_RS02835 0.79 +1.5 580,602 - BWI76_RS02835 0.79 +0.5 580,602 - BWI76_RS02835 0.79 +1.9 580,612 + -0.5 580,612 + BWI76_RS02835 0.79 +2.2 580,612 + BWI76_RS02835 0.79 -0.3 580,612 + BWI76_RS02835 0.79 -1.4 580,613 - BWI76_RS02835 0.80 +0.5 580,620 - BWI76_RS02835 0.80 +0.9 580,620 - BWI76_RS02835 0.80 -0.5 580,620 - BWI76_RS02835 0.80 -0.1 580,620 - BWI76_RS02835 0.80 +0.6 580,620 - BWI76_RS02835 0.80 -1.5 580,632 + BWI76_RS02835 0.81 +0.2 580,632 + BWI76_RS02835 0.81 -0.1 580,640 - BWI76_RS02835 0.82 -0.5 580,653 - BWI76_RS02835 0.83 +1.3 580,658 - BWI76_RS02835 0.83 +1.5 580,658 - BWI76_RS02835 0.83 -0.1 580,707 + BWI76_RS02835 0.88 -0.6 580,707 + BWI76_RS02835 0.88 +0.5 580,715 - BWI76_RS02835 0.88 +0.7 580,715 - BWI76_RS02835 0.88 +0.1 580,740 - -0.2 580,779 + +1.5 580,779 + +0.3 580,785 - +1.5 580,785 - +1.8 580,787 - -0.9 580,787 - -0.5 580,787 - -0.1 580,789 + -1.1 580,818 - +1.3 580,818 - +0.3 580,825 + -1.1 580,830 + -0.9 580,833 - +1.0 580,833 - -0.8 580,835 + +2.5 580,835 + +0.5 580,835 + +1.6 580,836 + +1.5 580,836 + -1.0 580,843 - +1.5 580,843 - +0.4 580,843 - -0.5 580,843 - -0.1 580,843 - +0.5 580,843 - -0.5 580,843 - +0.6 580,843 - +0.1 580,843 - -0.5 580,843 - +1.1 580,843 - +1.0 580,843 - +0.4 580,849 - +0.3 580,904 + -0.7 580,968 - +1.7 581,015 - +0.3 581,060 + -2.1 581,061 + +0.3 581,062 + +0.6 581,062 + +1.1 581,070 - +0.0 581,075 - +0.3 581,094 + -1.1 581,099 + -0.1 581,099 + -0.5 581,099 + -0.1 581,099 + -1.9 581,102 - -0.5 581,104 + -1.5 581,107 - +0.4 581,107 - -0.1 581,107 - +0.0 581,107 - +0.2 581,107 - +0.5 581,109 + -1.3 581,117 - +1.5 581,132 - +1.5 581,134 + +0.8 581,136 + -2.3 581,142 - +1.2 581,142 - +1.2 581,152 + -2.4 581,159 - +1.9 581,159 - -0.1 581,159 - -0.7 581,159 - -0.3 581,164 - +0.2 581,164 - +1.8 581,166 + -0.6 581,166 + -0.1 581,166 + +0.5 581,166 + +1.7 581,166 + -0.0 581,166 + -1.0 581,169 - -0.1 581,174 - -0.2 581,174 - +1.6 581,174 - +0.6 581,174 - +1.0 581,174 - -0.8 581,179 + -1.7 581,187 - +0.5 581,197 - +0.5 581,197 - +0.2 581,215 - BWI76_RS02840 0.11 -1.4 581,306 + BWI76_RS02840 0.17 -0.7 581,309 + BWI76_RS02840 0.17 -1.5 581,365 + BWI76_RS02840 0.21 +0.2 581,375 + BWI76_RS02840 0.22 +0.5 581,375 + BWI76_RS02840 0.22 -0.5 581,380 + BWI76_RS02840 0.22 +0.5 581,380 + BWI76_RS02840 0.22 -0.1 581,382 + BWI76_RS02840 0.22 -0.1 581,382 + BWI76_RS02840 0.22 +2.6 581,383 - BWI76_RS02840 0.22 +0.5 581,388 - BWI76_RS02840 0.22 +0.3 581,390 - BWI76_RS02840 0.23 -0.2 581,390 - BWI76_RS02840 0.23 +0.4 581,390 - BWI76_RS02840 0.23 +0.7 581,429 - BWI76_RS02840 0.25 -0.2 581,452 - BWI76_RS02840 0.27 -0.2 581,461 - BWI76_RS02840 0.27 -0.5 581,506 + BWI76_RS02840 0.30 +0.4 581,509 - BWI76_RS02840 0.30 -0.8 581,514 - BWI76_RS02840 0.31 -0.3 581,525 + BWI76_RS02840 0.31 -0.0 581,533 - BWI76_RS02840 0.32 -0.0 581,555 - BWI76_RS02840 0.33 +0.4 581,562 + BWI76_RS02840 0.34 +0.0 581,570 - BWI76_RS02840 0.34 +0.1 581,588 - BWI76_RS02840 0.36 +0.9 581,699 + BWI76_RS02840 0.43 +0.3 581,709 + BWI76_RS02840 0.44 -0.1 581,709 - BWI76_RS02840 0.44 +0.7 581,775 + BWI76_RS02840 0.48 +0.9 581,847 - BWI76_RS02840 0.53 -0.9 581,883 + BWI76_RS02840 0.55 -0.0 581,948 - BWI76_RS02840 0.59 -0.5 581,971 + BWI76_RS02840 0.61 +0.4 582,007 - BWI76_RS02840 0.63 +0.9 582,014 - BWI76_RS02840 0.64 -0.5 582,022 - BWI76_RS02840 0.64 +0.4 582,022 - BWI76_RS02840 0.64 +1.3 582,142 + BWI76_RS02840 0.72 -0.3 582,167 - BWI76_RS02840 0.74 +0.5 582,216 + BWI76_RS02840 0.77 +0.4 582,382 - BWI76_RS02840 0.88 -0.1 582,402 - BWI76_RS02840 0.89 +2.5 582,433 - -1.1 582,436 + -1.1 582,436 + +1.4 582,436 + +0.5 582,436 + +0.2 582,455 - +1.5 582,455 - +1.3 582,475 + +0.5 582,484 - +0.6 582,487 + +0.8 582,524 - -0.4 582,548 + +0.1 582,573 + +0.1 582,608 + +3.5 582,616 + -1.1 582,676 + -0.5 582,731 - +0.6 582,963 + +0.8
Or see this region's nucleotide sequence