Experiment: MoLS4 with Succinate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF5594 and DVU0491 are separated by 334 nucleotides DVU0491 and argC are separated by 235 nucleotides
DORF5594: DORF5594 - SEED: Predicted signal transduction protein, at 558,573 to 559,487
DORF5594
DVU0491: DVU0491 - HDIG domain protein (TIGR), at 559,822 to 561,027
DVU0491
DVU0492: argC - N-acetyl-gamma-glutamyl-phosphate reductase (TIGR), at 561,263 to 562,327
argC
Position (kb) 559
560
561
562 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 558.913 kb on + strand, within DORF5594 at 558.913 kb on + strand, within DORF5594 at 558.923 kb on + strand, within DORF5594 at 558.924 kb on + strand, within DORF5594 at 558.936 kb on + strand, within DORF5594 at 558.963 kb on + strand, within DORF5594 at 558.971 kb on - strand, within DORF5594 at 558.987 kb on - strand, within DORF5594 at 558.987 kb on - strand, within DORF5594 at 558.994 kb on - strand, within DORF5594 at 559.083 kb on - strand, within DORF5594 at 559.121 kb on + strand, within DORF5594 at 559.149 kb on - strand, within DORF5594 at 559.169 kb on + strand, within DORF5594 at 559.174 kb on + strand, within DORF5594 at 559.177 kb on - strand, within DORF5594 at 559.177 kb on - strand, within DORF5594 at 559.177 kb on - strand, within DORF5594 at 559.177 kb on - strand, within DORF5594 at 559.221 kb on + strand, within DORF5594 at 559.318 kb on - strand, within DORF5594 at 559.386 kb on - strand, within DORF5594 at 559.528 kb on + strand at 559.548 kb on + strand at 559.674 kb on - strand at 559.717 kb on - strand at 559.821 kb on - strand at 559.841 kb on + strand at 560.062 kb on - strand, within DVU0491 at 560.128 kb on + strand, within DVU0491 at 560.136 kb on + strand, within DVU0491 at 560.238 kb on - strand, within DVU0491 at 560.288 kb on + strand, within DVU0491 at 560.302 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.309 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.353 kb on + strand, within DVU0491 at 560.473 kb on - strand, within DVU0491 at 560.514 kb on - strand, within DVU0491 at 560.574 kb on + strand, within DVU0491 at 560.870 kb on - strand, within DVU0491 at 560.992 kb on + strand at 561.091 kb on + strand at 561.105 kb on - strand at 561.123 kb on - strand at 561.204 kb on - strand at 561.227 kb on + strand at 561.275 kb on - strand at 561.275 kb on - strand at 561.285 kb on - strand at 561.329 kb on + strand at 561.521 kb on - strand, within argC at 561.582 kb on - strand, within argC at 561.700 kb on + strand, within argC at 561.708 kb on - strand, within argC at 561.709 kb on - strand, within argC at 561.719 kb on + strand, within argC at 561.727 kb on - strand, within argC at 561.737 kb on - strand, within argC at 561.830 kb on - strand, within argC at 561.832 kb on - strand, within argC at 561.841 kb on + strand, within argC at 561.858 kb on - strand, within argC at 561.885 kb on + strand, within argC at 561.944 kb on - strand, within argC at 561.959 kb on + strand, within argC
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Succinate 10mM remove 558,913 + DORF5594 0.37 -0.3 558,913 + DORF5594 0.37 -1.2 558,923 + DORF5594 0.38 -0.3 558,924 + DORF5594 0.38 -0.3 558,936 + DORF5594 0.40 +1.1 558,963 + DORF5594 0.43 -0.1 558,971 - DORF5594 0.43 -1.5 558,987 - DORF5594 0.45 -0.8 558,987 - DORF5594 0.45 +0.4 558,994 - DORF5594 0.46 -0.2 559,083 - DORF5594 0.56 -0.3 559,121 + DORF5594 0.60 -0.3 559,149 - DORF5594 0.63 -0.1 559,169 + DORF5594 0.65 -0.9 559,174 + DORF5594 0.66 -0.7 559,177 - DORF5594 0.66 +1.1 559,177 - DORF5594 0.66 -0.1 559,177 - DORF5594 0.66 -1.1 559,177 - DORF5594 0.66 +1.6 559,221 + DORF5594 0.71 +1.0 559,318 - DORF5594 0.81 -0.0 559,386 - DORF5594 0.89 -0.0 559,528 + +1.1 559,548 + +0.4 559,674 - -2.2 559,717 - -1.0 559,821 - +1.6 559,841 + -0.2 560,062 - DVU0491 0.20 -0.1 560,128 + DVU0491 0.25 +1.1 560,136 + DVU0491 0.26 -0.6 560,238 - DVU0491 0.34 -0.1 560,288 + DVU0491 0.39 -0.5 560,302 + DVU0491 0.40 -0.2 560,303 + DVU0491 0.40 -0.4 560,303 + DVU0491 0.40 +0.8 560,303 + DVU0491 0.40 -1.8 560,309 - DVU0491 0.40 -1.4 560,311 - DVU0491 0.41 -0.3 560,311 - DVU0491 0.41 -0.6 560,311 - DVU0491 0.41 -0.1 560,353 + DVU0491 0.44 -1.5 560,473 - DVU0491 0.54 -1.8 560,514 - DVU0491 0.57 -0.2 560,574 + DVU0491 0.62 -0.6 560,870 - DVU0491 0.87 -1.0 560,992 + -0.3 561,091 + -1.2 561,105 - -0.7 561,123 - +0.9 561,204 - -0.4 561,227 + +0.1 561,275 - +0.6 561,275 - -6.8 561,285 - -0.4 561,329 + +1.1 561,521 - argC DVU0492 0.24 -1.5 561,582 - argC DVU0492 0.30 -0.8 561,700 + argC DVU0492 0.41 -5.3 561,708 - argC DVU0492 0.42 -5.2 561,709 - argC DVU0492 0.42 +0.1 561,719 + argC DVU0492 0.43 -1.0 561,727 - argC DVU0492 0.44 -2.2 561,737 - argC DVU0492 0.45 -3.8 561,830 - argC DVU0492 0.53 -2.6 561,832 - argC DVU0492 0.53 -4.7 561,841 + argC DVU0492 0.54 -1.5 561,858 - argC DVU0492 0.56 -5.1 561,885 + argC DVU0492 0.58 -4.3 561,944 - argC DVU0492 0.64 -1.8 561,959 + argC DVU0492 0.65 -3.5
Or see this region's nucleotide sequence