Experiment: LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19300 and BWI76_RS19305 are separated by 10 nucleotides BWI76_RS19305 and BWI76_RS19310 overlap by 29 nucleotides BWI76_RS19310 and BWI76_RS19315 overlap by 4 nucleotides
BWI76_RS19300: BWI76_RS19300 - ABC transporter ATP-binding protein, at 4,020,682 to 4,021,455
_RS19300
BWI76_RS19305: BWI76_RS19305 - ABC transporter ATP-binding protein, at 4,021,466 to 4,022,329
_RS19305
BWI76_RS19310: BWI76_RS19310 - ABC transporter permease, at 4,022,301 to 4,023,206
_RS19310
BWI76_RS19315: BWI76_RS19315 - ABC transporter permease, at 4,023,203 to 4,024,240
_RS19315
Position (kb) 4021
4022
4023 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4020.590 kb on - strand at 4020.658 kb on + strand at 4020.658 kb on + strand at 4020.662 kb on - strand at 4020.662 kb on - strand at 4020.675 kb on + strand at 4020.688 kb on - strand at 4020.700 kb on - strand at 4020.700 kb on - strand at 4020.731 kb on + strand at 4020.731 kb on + strand at 4020.739 kb on - strand at 4020.748 kb on + strand at 4020.762 kb on + strand, within BWI76_RS19300 at 4020.770 kb on + strand, within BWI76_RS19300 at 4020.770 kb on + strand, within BWI76_RS19300 at 4020.770 kb on + strand, within BWI76_RS19300 at 4020.778 kb on - strand, within BWI76_RS19300 at 4020.873 kb on + strand, within BWI76_RS19300 at 4021.002 kb on - strand, within BWI76_RS19300 at 4021.052 kb on - strand, within BWI76_RS19300 at 4021.166 kb on - strand, within BWI76_RS19300 at 4021.275 kb on + strand, within BWI76_RS19300 at 4021.917 kb on + strand, within BWI76_RS19305 at 4021.948 kb on + strand, within BWI76_RS19305 at 4022.054 kb on + strand, within BWI76_RS19305 at 4022.157 kb on + strand, within BWI76_RS19305 at 4022.241 kb on - strand, within BWI76_RS19305 at 4022.298 kb on + strand at 4022.546 kb on - strand, within BWI76_RS19310 at 4022.644 kb on - strand, within BWI76_RS19310
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,020,590 - -2.2 4,020,658 + +1.0 4,020,658 + -1.2 4,020,662 - -1.0 4,020,662 - +2.1 4,020,675 + +0.5 4,020,688 - +0.4 4,020,700 - -1.0 4,020,700 - +0.1 4,020,731 + +2.0 4,020,731 + -0.6 4,020,739 - +0.3 4,020,748 + +0.9 4,020,762 + BWI76_RS19300 0.10 +0.5 4,020,770 + BWI76_RS19300 0.11 +0.5 4,020,770 + BWI76_RS19300 0.11 -1.4 4,020,770 + BWI76_RS19300 0.11 -0.3 4,020,778 - BWI76_RS19300 0.12 -0.6 4,020,873 + BWI76_RS19300 0.25 -0.0 4,021,002 - BWI76_RS19300 0.41 +0.7 4,021,052 - BWI76_RS19300 0.48 -0.1 4,021,166 - BWI76_RS19300 0.63 +0.3 4,021,275 + BWI76_RS19300 0.77 +0.6 4,021,917 + BWI76_RS19305 0.52 +0.6 4,021,948 + BWI76_RS19305 0.56 +0.6 4,022,054 + BWI76_RS19305 0.68 +0.9 4,022,157 + BWI76_RS19305 0.80 +0.5 4,022,241 - BWI76_RS19305 0.90 +0.1 4,022,298 + -1.4 4,022,546 - BWI76_RS19310 0.27 +1.0 4,022,644 - BWI76_RS19310 0.38 +0.4
Or see this region's nucleotide sequence