Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15890

Experiment: LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15885 and BWI76_RS15890 are separated by 177 nucleotidesBWI76_RS15890 and BWI76_RS15895 are separated by 14 nucleotides BWI76_RS15885: BWI76_RS15885 - putative phage integrase, at 3,295,716 to 3,296,996 _RS15885 BWI76_RS15890: BWI76_RS15890 - Zn-dependent oxidoreductase, at 3,297,174 to 3,298,190 _RS15890 BWI76_RS15895: BWI76_RS15895 - starvation-sensing protein RspA, at 3,298,205 to 3,299,419 _RS15895 Position (kb) 3297 3298 3299Strain fitness (log2 ratio) -2 -1 0 1 2at 3296.176 kb on - strand, within BWI76_RS15885at 3296.305 kb on - strand, within BWI76_RS15885at 3296.433 kb on - strand, within BWI76_RS15885at 3296.434 kb on - strand, within BWI76_RS15885at 3296.445 kb on - strand, within BWI76_RS15885at 3296.596 kb on - strand, within BWI76_RS15885at 3296.677 kb on - strand, within BWI76_RS15885at 3296.682 kb on - strand, within BWI76_RS15885at 3296.701 kb on + strand, within BWI76_RS15885at 3296.708 kb on - strand, within BWI76_RS15885at 3296.722 kb on + strandat 3296.814 kb on + strand, within BWI76_RS15885at 3296.818 kb on + strandat 3296.934 kb on - strandat 3297.047 kb on + strandat 3297.047 kb on + strandat 3297.060 kb on - strandat 3297.065 kb on - strandat 3297.079 kb on - strandat 3297.145 kb on + strandat 3297.153 kb on - strandat 3297.157 kb on + strandat 3297.185 kb on - strandat 3297.202 kb on - strandat 3297.235 kb on - strandat 3297.238 kb on + strandat 3297.248 kb on + strandat 3297.268 kb on + strandat 3297.319 kb on + strand, within BWI76_RS15890at 3297.371 kb on + strand, within BWI76_RS15890at 3297.400 kb on - strand, within BWI76_RS15890at 3297.597 kb on - strand, within BWI76_RS15890at 3297.619 kb on + strand, within BWI76_RS15890at 3297.637 kb on - strandat 3297.688 kb on + strand, within BWI76_RS15890at 3297.696 kb on - strand, within BWI76_RS15890at 3297.875 kb on + strand, within BWI76_RS15890at 3297.880 kb on + strand, within BWI76_RS15890at 3297.943 kb on + strand, within BWI76_RS15890at 3298.219 kb on - strandat 3298.386 kb on - strand, within BWI76_RS15895at 3298.552 kb on + strand, within BWI76_RS15895at 3298.728 kb on - strand, within BWI76_RS15895at 3298.917 kb on + strand, within BWI76_RS15895at 3299.171 kb on + strand, within BWI76_RS15895

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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3,296,176 - BWI76_RS15885 0.36 -0.3
3,296,305 - BWI76_RS15885 0.46 +0.8
3,296,433 - BWI76_RS15885 0.56 +1.1
3,296,434 - BWI76_RS15885 0.56 -0.5
3,296,445 - BWI76_RS15885 0.57 -2.4
3,296,596 - BWI76_RS15885 0.69 -2.2
3,296,677 - BWI76_RS15885 0.75 +0.9
3,296,682 - BWI76_RS15885 0.75 -0.2
3,296,701 + BWI76_RS15885 0.77 -0.7
3,296,708 - BWI76_RS15885 0.77 -0.7
3,296,722 + +0.5
3,296,814 + BWI76_RS15885 0.86 -1.0
3,296,818 + +0.1
3,296,934 - +0.3
3,297,047 + +1.8
3,297,047 + +1.1
3,297,060 - +0.6
3,297,065 - +1.1
3,297,079 - +1.9
3,297,145 + -0.2
3,297,153 - +0.9
3,297,157 + +1.3
3,297,185 - -2.2
3,297,202 - +0.1
3,297,235 - +0.5
3,297,238 + -0.5
3,297,248 + -0.6
3,297,268 + -0.1
3,297,319 + BWI76_RS15890 0.14 +0.8
3,297,371 + BWI76_RS15890 0.19 +0.1
3,297,400 - BWI76_RS15890 0.22 -1.8
3,297,597 - BWI76_RS15890 0.42 +0.7
3,297,619 + BWI76_RS15890 0.44 -0.7
3,297,637 - -0.5
3,297,688 + BWI76_RS15890 0.51 -0.2
3,297,696 - BWI76_RS15890 0.51 +1.2
3,297,875 + BWI76_RS15890 0.69 +0.4
3,297,880 + BWI76_RS15890 0.69 +1.1
3,297,943 + BWI76_RS15890 0.76 +0.9
3,298,219 - +0.1
3,298,386 - BWI76_RS15895 0.15 +0.5
3,298,552 + BWI76_RS15895 0.29 +0.8
3,298,728 - BWI76_RS15895 0.43 +0.8
3,298,917 + BWI76_RS15895 0.59 +0.6
3,299,171 + BWI76_RS15895 0.80 +2.2

Or see this region's nucleotide sequence