Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04155

Experiment: LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04150 and BWI76_RS04155 are separated by 10 nucleotidesBWI76_RS04155 and BWI76_RS04160 are separated by 104 nucleotides BWI76_RS04150: BWI76_RS04150 - lipoate--protein ligase A, at 853,899 to 854,915 _RS04150 BWI76_RS04155: BWI76_RS04155 - membrane protein, at 854,926 to 855,567 _RS04155 BWI76_RS04160: BWI76_RS04160 - phosphoserine phosphatase, at 855,672 to 856,643 _RS04160 Position (kb) 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1at 854.125 kb on - strand, within BWI76_RS04150at 854.125 kb on - strand, within BWI76_RS04150at 854.264 kb on - strand, within BWI76_RS04150at 854.274 kb on - strand, within BWI76_RS04150at 854.379 kb on + strand, within BWI76_RS04150at 854.386 kb on + strand, within BWI76_RS04150at 854.387 kb on - strand, within BWI76_RS04150at 854.505 kb on + strand, within BWI76_RS04150at 854.513 kb on - strand, within BWI76_RS04150at 854.670 kb on - strand, within BWI76_RS04150at 854.972 kb on - strandat 855.070 kb on + strand, within BWI76_RS04155at 855.251 kb on - strand, within BWI76_RS04155at 855.251 kb on - strand, within BWI76_RS04155at 855.486 kb on + strand, within BWI76_RS04155at 855.504 kb on - strandat 855.512 kb on - strandat 855.522 kb on - strandat 855.691 kb on + strandat 855.726 kb on + strandat 855.797 kb on + strand, within BWI76_RS04160at 855.866 kb on - strand, within BWI76_RS04160at 855.919 kb on + strand, within BWI76_RS04160at 855.927 kb on - strand, within BWI76_RS04160at 856.200 kb on - strand, within BWI76_RS04160at 856.310 kb on + strand, within BWI76_RS04160at 856.331 kb on - strand, within BWI76_RS04160

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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854,125 - BWI76_RS04150 0.22 -0.5
854,125 - BWI76_RS04150 0.22 +1.0
854,264 - BWI76_RS04150 0.36 +0.7
854,274 - BWI76_RS04150 0.37 +0.3
854,379 + BWI76_RS04150 0.47 +0.0
854,386 + BWI76_RS04150 0.48 +1.4
854,387 - BWI76_RS04150 0.48 +0.1
854,505 + BWI76_RS04150 0.60 +0.0
854,513 - BWI76_RS04150 0.60 -0.3
854,670 - BWI76_RS04150 0.76 -0.4
854,972 - -0.0
855,070 + BWI76_RS04155 0.22 +0.6
855,251 - BWI76_RS04155 0.51 -0.0
855,251 - BWI76_RS04155 0.51 +1.1
855,486 + BWI76_RS04155 0.87 +0.2
855,504 - +1.0
855,512 - +0.8
855,522 - +1.1
855,691 + -1.5
855,726 + -2.2
855,797 + BWI76_RS04160 0.13 -0.5
855,866 - BWI76_RS04160 0.20 -1.5
855,919 + BWI76_RS04160 0.25 -0.7
855,927 - BWI76_RS04160 0.26 -2.8
856,200 - BWI76_RS04160 0.54 +0.1
856,310 + BWI76_RS04160 0.66 -2.8
856,331 - BWI76_RS04160 0.68 +1.1

Or see this region's nucleotide sequence