Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01920

Experiment: LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01915 and BWI76_RS01920 are separated by 145 nucleotidesBWI76_RS01920 and BWI76_RS01925 are separated by 214 nucleotides BWI76_RS01915: BWI76_RS01915 - replicative DNA helicase, at 389,441 to 390,856 _RS01915 BWI76_RS01920: BWI76_RS01920 - alanine racemase, at 391,002 to 392,081 _RS01920 BWI76_RS01925: BWI76_RS01925 - aromatic amino acid aminotransferase, at 392,296 to 393,489 _RS01925 Position (kb) 391 392 393Strain fitness (log2 ratio) -1 0 1 2at 390.894 kb on + strandat 390.897 kb on - strandat 391.119 kb on - strand, within BWI76_RS01920at 391.131 kb on - strand, within BWI76_RS01920at 391.148 kb on + strand, within BWI76_RS01920at 391.156 kb on - strand, within BWI76_RS01920at 391.188 kb on + strand, within BWI76_RS01920at 391.301 kb on - strand, within BWI76_RS01920at 391.301 kb on - strand, within BWI76_RS01920at 391.417 kb on + strand, within BWI76_RS01920at 391.429 kb on + strand, within BWI76_RS01920at 391.439 kb on + strand, within BWI76_RS01920at 391.439 kb on + strand, within BWI76_RS01920at 391.447 kb on - strand, within BWI76_RS01920at 391.555 kb on + strand, within BWI76_RS01920at 391.590 kb on + strand, within BWI76_RS01920at 391.830 kb on + strand, within BWI76_RS01920at 392.257 kb on - strandat 392.267 kb on - strandat 392.508 kb on + strand, within BWI76_RS01925at 392.563 kb on - strand, within BWI76_RS01925at 392.596 kb on - strand, within BWI76_RS01925at 392.840 kb on + strand, within BWI76_RS01925at 392.860 kb on + strand, within BWI76_RS01925at 392.988 kb on - strand, within BWI76_RS01925

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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390,894 + -1.6
390,897 - -0.3
391,119 - BWI76_RS01920 0.11 +0.7
391,131 - BWI76_RS01920 0.12 +1.0
391,148 + BWI76_RS01920 0.14 +0.2
391,156 - BWI76_RS01920 0.14 -0.3
391,188 + BWI76_RS01920 0.17 +0.1
391,301 - BWI76_RS01920 0.28 +2.2
391,301 - BWI76_RS01920 0.28 +1.6
391,417 + BWI76_RS01920 0.38 +0.0
391,429 + BWI76_RS01920 0.40 -1.0
391,439 + BWI76_RS01920 0.40 +0.4
391,439 + BWI76_RS01920 0.40 -0.8
391,447 - BWI76_RS01920 0.41 +1.2
391,555 + BWI76_RS01920 0.51 +0.6
391,590 + BWI76_RS01920 0.54 +0.8
391,830 + BWI76_RS01920 0.77 -0.8
392,257 - +0.2
392,267 - +1.2
392,508 + BWI76_RS01925 0.18 -0.8
392,563 - BWI76_RS01925 0.22 -0.3
392,596 - BWI76_RS01925 0.25 -1.3
392,840 + BWI76_RS01925 0.46 -0.2
392,860 + BWI76_RS01925 0.47 -0.1
392,988 - BWI76_RS01925 0.58 -0.9

Or see this region's nucleotide sequence