Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12610

Experiment: LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12605 and BWI76_RS12610 are separated by 162 nucleotidesBWI76_RS12610 and BWI76_RS12615 are separated by 65 nucleotides BWI76_RS12605: BWI76_RS12605 - hypothetical protein, at 2,630,700 to 2,631,836 _RS12605 BWI76_RS12610: BWI76_RS12610 - LysR family transcriptional regulator, at 2,631,999 to 2,632,883 _RS12610 BWI76_RS12615: BWI76_RS12615 - LysR family transcriptional regulator, at 2,632,949 to 2,633,860 _RS12615 Position (kb) 2631 2632 2633Strain fitness (log2 ratio) -2 -1 0 1at 2631.151 kb on + strand, within BWI76_RS12605at 2631.177 kb on + strand, within BWI76_RS12605at 2631.637 kb on - strand, within BWI76_RS12605at 2631.753 kb on + strandat 2631.778 kb on + strandat 2632.089 kb on - strand, within BWI76_RS12610at 2632.100 kb on - strand, within BWI76_RS12610at 2632.723 kb on - strand, within BWI76_RS12610at 2632.908 kb on - strandat 2633.143 kb on - strand, within BWI76_RS12615at 2633.145 kb on + strand, within BWI76_RS12615at 2633.596 kb on + strand, within BWI76_RS12615at 2633.609 kb on - strand, within BWI76_RS12615at 2633.721 kb on + strand, within BWI76_RS12615at 2633.726 kb on + strand, within BWI76_RS12615at 2633.729 kb on - strand, within BWI76_RS12615

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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2,631,151 + BWI76_RS12605 0.40 +0.7
2,631,177 + BWI76_RS12605 0.42 +0.2
2,631,637 - BWI76_RS12605 0.82 -0.6
2,631,753 + -2.0
2,631,778 + -0.1
2,632,089 - BWI76_RS12610 0.10 -1.2
2,632,100 - BWI76_RS12610 0.11 -1.4
2,632,723 - BWI76_RS12610 0.82 -1.0
2,632,908 - +0.9
2,633,143 - BWI76_RS12615 0.21 +0.5
2,633,145 + BWI76_RS12615 0.21 -0.3
2,633,596 + BWI76_RS12615 0.71 +1.0
2,633,609 - BWI76_RS12615 0.72 -0.0
2,633,721 + BWI76_RS12615 0.85 -0.2
2,633,726 + BWI76_RS12615 0.85 -0.2
2,633,729 - BWI76_RS12615 0.86 +0.1

Or see this region's nucleotide sequence