Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16065

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16060 and BWI76_RS16065 are separated by 215 nucleotidesBWI76_RS16065 and BWI76_RS16070 are separated by 286 nucleotides BWI76_RS16060: BWI76_RS16060 - LysR family transcriptional regulator, at 3,329,158 to 3,330,084 _RS16060 BWI76_RS16065: BWI76_RS16065 - malate:quinone oxidoreductase, at 3,330,300 to 3,331,955 _RS16065 BWI76_RS16070: BWI76_RS16070 - N-acetylmuramic acid 6-phosphate etherase, at 3,332,242 to 3,333,147 _RS16070 Position (kb) 3330 3331 3332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3329.424 kb on + strand, within BWI76_RS16060at 3329.432 kb on - strand, within BWI76_RS16060at 3329.522 kb on + strand, within BWI76_RS16060at 3329.564 kb on + strand, within BWI76_RS16060at 3329.756 kb on - strand, within BWI76_RS16060at 3329.948 kb on - strandat 3330.467 kb on + strand, within BWI76_RS16065at 3330.538 kb on - strand, within BWI76_RS16065at 3330.736 kb on - strand, within BWI76_RS16065at 3330.745 kb on - strand, within BWI76_RS16065at 3330.791 kb on + strand, within BWI76_RS16065at 3330.793 kb on - strand, within BWI76_RS16065at 3330.815 kb on + strand, within BWI76_RS16065at 3330.830 kb on + strand, within BWI76_RS16065at 3330.939 kb on - strandat 3331.006 kb on + strand, within BWI76_RS16065at 3331.039 kb on + strand, within BWI76_RS16065at 3331.047 kb on - strand, within BWI76_RS16065at 3331.052 kb on - strand, within BWI76_RS16065at 3331.056 kb on + strand, within BWI76_RS16065at 3331.078 kb on - strand, within BWI76_RS16065at 3331.143 kb on - strand, within BWI76_RS16065at 3331.193 kb on + strand, within BWI76_RS16065at 3331.233 kb on - strand, within BWI76_RS16065at 3331.255 kb on - strand, within BWI76_RS16065at 3331.350 kb on + strand, within BWI76_RS16065at 3331.352 kb on + strandat 3331.352 kb on + strand, within BWI76_RS16065at 3331.352 kb on + strand, within BWI76_RS16065at 3331.359 kb on + strand, within BWI76_RS16065at 3331.359 kb on + strand, within BWI76_RS16065at 3331.360 kb on + strand, within BWI76_RS16065at 3331.360 kb on + strand, within BWI76_RS16065at 3331.360 kb on + strand, within BWI76_RS16065at 3331.365 kb on + strand, within BWI76_RS16065at 3331.367 kb on - strand, within BWI76_RS16065at 3331.367 kb on - strand, within BWI76_RS16065at 3331.368 kb on - strand, within BWI76_RS16065at 3331.370 kb on + strand, within BWI76_RS16065at 3331.373 kb on - strand, within BWI76_RS16065at 3331.382 kb on + strand, within BWI76_RS16065at 3331.382 kb on + strand, within BWI76_RS16065at 3331.390 kb on - strand, within BWI76_RS16065at 3331.390 kb on - strand, within BWI76_RS16065at 3331.390 kb on - strand, within BWI76_RS16065at 3331.399 kb on + strand, within BWI76_RS16065at 3331.399 kb on + strand, within BWI76_RS16065at 3331.407 kb on - strand, within BWI76_RS16065at 3331.461 kb on + strand, within BWI76_RS16065at 3331.464 kb on - strand, within BWI76_RS16065at 3331.469 kb on - strand, within BWI76_RS16065at 3331.473 kb on - strand, within BWI76_RS16065at 3331.486 kb on + strand, within BWI76_RS16065at 3331.493 kb on - strand, within BWI76_RS16065at 3331.494 kb on - strand, within BWI76_RS16065at 3331.494 kb on - strand, within BWI76_RS16065at 3331.494 kb on - strand, within BWI76_RS16065at 3331.494 kb on - strand, within BWI76_RS16065at 3331.494 kb on - strand, within BWI76_RS16065at 3331.524 kb on + strand, within BWI76_RS16065at 3331.532 kb on - strand, within BWI76_RS16065at 3331.536 kb on - strand, within BWI76_RS16065at 3331.548 kb on + strand, within BWI76_RS16065at 3331.549 kb on - strand, within BWI76_RS16065at 3331.577 kb on - strand, within BWI76_RS16065at 3331.577 kb on - strand, within BWI76_RS16065at 3331.587 kb on + strand, within BWI76_RS16065at 3331.590 kb on - strand, within BWI76_RS16065at 3331.597 kb on + strand, within BWI76_RS16065at 3331.597 kb on + strand, within BWI76_RS16065at 3331.597 kb on + strand, within BWI76_RS16065at 3331.597 kb on + strand, within BWI76_RS16065at 3331.597 kb on + strand, within BWI76_RS16065at 3331.605 kb on - strand, within BWI76_RS16065at 3331.605 kb on - strand, within BWI76_RS16065at 3331.605 kb on - strand, within BWI76_RS16065at 3331.605 kb on - strand, within BWI76_RS16065at 3331.605 kb on - strand, within BWI76_RS16065at 3331.607 kb on + strand, within BWI76_RS16065at 3331.615 kb on - strand, within BWI76_RS16065at 3331.623 kb on - strand, within BWI76_RS16065at 3331.623 kb on - strand, within BWI76_RS16065at 3331.738 kb on + strand, within BWI76_RS16065at 3331.771 kb on + strand, within BWI76_RS16065at 3331.779 kb on - strand, within BWI76_RS16065at 3331.779 kb on - strand, within BWI76_RS16065at 3331.789 kb on - strand, within BWI76_RS16065at 3331.801 kb on - strandat 3331.821 kb on - strandat 3332.128 kb on + strandat 3332.162 kb on + strandat 3332.181 kb on + strandat 3332.226 kb on + strandat 3332.247 kb on - strandat 3332.251 kb on + strandat 3332.251 kb on + strandat 3332.251 kb on + strandat 3332.251 kb on + strandat 3332.251 kb on + strandat 3332.251 kb on + strandat 3332.251 kb on + strandat 3332.251 kb on + strandat 3332.251 kb on + strandat 3332.251 kb on + strandat 3332.259 kb on - strandat 3332.259 kb on - strandat 3332.259 kb on - strandat 3332.259 kb on - strandat 3332.259 kb on - strandat 3332.259 kb on - strandat 3332.259 kb on - strandat 3332.259 kb on - strandat 3332.259 kb on - strandat 3332.259 kb on - strandat 3332.259 kb on - strandat 3332.263 kb on + strandat 3332.281 kb on - strandat 3332.281 kb on - strandat 3332.284 kb on + strandat 3332.284 kb on + strandat 3332.284 kb on + strandat 3332.285 kb on + strandat 3332.292 kb on - strandat 3332.293 kb on - strandat 3332.335 kb on + strand, within BWI76_RS16070at 3332.338 kb on - strand, within BWI76_RS16070at 3332.387 kb on + strand, within BWI76_RS16070at 3332.387 kb on + strand, within BWI76_RS16070at 3332.387 kb on + strand, within BWI76_RS16070at 3332.410 kb on + strand, within BWI76_RS16070at 3332.465 kb on - strand, within BWI76_RS16070at 3332.467 kb on - strand, within BWI76_RS16070at 3332.713 kb on - strand, within BWI76_RS16070at 3332.927 kb on + strand, within BWI76_RS16070

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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3,329,424 + BWI76_RS16060 0.29 +0.5
3,329,432 - BWI76_RS16060 0.30 -0.5
3,329,522 + BWI76_RS16060 0.39 -0.4
3,329,564 + BWI76_RS16060 0.44 +0.2
3,329,756 - BWI76_RS16060 0.65 +0.3
3,329,948 - +1.5
3,330,467 + BWI76_RS16065 0.10 +1.0
3,330,538 - BWI76_RS16065 0.14 -0.3
3,330,736 - BWI76_RS16065 0.26 -1.1
3,330,745 - BWI76_RS16065 0.27 +0.2
3,330,791 + BWI76_RS16065 0.30 +0.9
3,330,793 - BWI76_RS16065 0.30 +0.8
3,330,815 + BWI76_RS16065 0.31 -2.4
3,330,830 + BWI76_RS16065 0.32 -2.1
3,330,939 - +0.5
3,331,006 + BWI76_RS16065 0.43 +0.1
3,331,039 + BWI76_RS16065 0.45 -0.4
3,331,047 - BWI76_RS16065 0.45 -0.1
3,331,052 - BWI76_RS16065 0.45 +0.1
3,331,056 + BWI76_RS16065 0.46 -2.3
3,331,078 - BWI76_RS16065 0.47 +0.2
3,331,143 - BWI76_RS16065 0.51 -0.9
3,331,193 + BWI76_RS16065 0.54 -0.3
3,331,233 - BWI76_RS16065 0.56 +1.1
3,331,255 - BWI76_RS16065 0.58 -0.2
3,331,350 + BWI76_RS16065 0.63 +1.2
3,331,352 + +2.8
3,331,352 + BWI76_RS16065 0.64 -0.1
3,331,352 + BWI76_RS16065 0.64 -0.3
3,331,359 + BWI76_RS16065 0.64 -0.1
3,331,359 + BWI76_RS16065 0.64 -3.1
3,331,360 + BWI76_RS16065 0.64 -0.1
3,331,360 + BWI76_RS16065 0.64 -3.4
3,331,360 + BWI76_RS16065 0.64 -1.3
3,331,365 + BWI76_RS16065 0.64 -2.5
3,331,367 - BWI76_RS16065 0.64 -1.5
3,331,367 - BWI76_RS16065 0.64 -0.1
3,331,368 - BWI76_RS16065 0.64 -0.3
3,331,370 + BWI76_RS16065 0.65 +1.2
3,331,373 - BWI76_RS16065 0.65 -1.1
3,331,382 + BWI76_RS16065 0.65 -0.3
3,331,382 + BWI76_RS16065 0.65 -1.3
3,331,390 - BWI76_RS16065 0.66 +0.6
3,331,390 - BWI76_RS16065 0.66 -0.1
3,331,390 - BWI76_RS16065 0.66 -0.1
3,331,399 + BWI76_RS16065 0.66 -1.5
3,331,399 + BWI76_RS16065 0.66 -1.2
3,331,407 - BWI76_RS16065 0.67 +1.5
3,331,461 + BWI76_RS16065 0.70 -0.4
3,331,464 - BWI76_RS16065 0.70 -0.6
3,331,469 - BWI76_RS16065 0.71 +0.5
3,331,473 - BWI76_RS16065 0.71 -0.6
3,331,486 + BWI76_RS16065 0.72 -2.5
3,331,493 - BWI76_RS16065 0.72 -0.1
3,331,494 - BWI76_RS16065 0.72 +0.2
3,331,494 - BWI76_RS16065 0.72 -1.1
3,331,494 - BWI76_RS16065 0.72 +0.5
3,331,494 - BWI76_RS16065 0.72 -1.1
3,331,494 - BWI76_RS16065 0.72 -2.5
3,331,524 + BWI76_RS16065 0.74 +2.3
3,331,532 - BWI76_RS16065 0.74 +0.2
3,331,536 - BWI76_RS16065 0.75 -0.8
3,331,548 + BWI76_RS16065 0.75 -0.7
3,331,549 - BWI76_RS16065 0.75 +0.5
3,331,577 - BWI76_RS16065 0.77 +1.5
3,331,577 - BWI76_RS16065 0.77 +0.7
3,331,587 + BWI76_RS16065 0.78 +1.5
3,331,590 - BWI76_RS16065 0.78 +2.3
3,331,597 + BWI76_RS16065 0.78 -0.1
3,331,597 + BWI76_RS16065 0.78 +0.5
3,331,597 + BWI76_RS16065 0.78 -0.8
3,331,597 + BWI76_RS16065 0.78 +1.1
3,331,597 + BWI76_RS16065 0.78 +0.3
3,331,605 - BWI76_RS16065 0.79 +0.3
3,331,605 - BWI76_RS16065 0.79 -0.5
3,331,605 - BWI76_RS16065 0.79 -0.5
3,331,605 - BWI76_RS16065 0.79 -1.3
3,331,605 - BWI76_RS16065 0.79 +1.5
3,331,607 + BWI76_RS16065 0.79 -0.3
3,331,615 - BWI76_RS16065 0.79 -1.2
3,331,623 - BWI76_RS16065 0.80 +0.7
3,331,623 - BWI76_RS16065 0.80 -0.1
3,331,738 + BWI76_RS16065 0.87 -0.7
3,331,771 + BWI76_RS16065 0.89 -2.5
3,331,779 - BWI76_RS16065 0.89 +2.2
3,331,779 - BWI76_RS16065 0.89 +1.5
3,331,789 - BWI76_RS16065 0.90 +2.5
3,331,801 - +0.2
3,331,821 - -0.1
3,332,128 + +0.8
3,332,162 + +2.1
3,332,181 + +1.1
3,332,226 + +0.5
3,332,247 - -0.2
3,332,251 + +0.7
3,332,251 + +0.9
3,332,251 + +0.5
3,332,251 + -1.5
3,332,251 + -0.5
3,332,251 + -3.2
3,332,251 + -1.0
3,332,251 + +0.7
3,332,251 + -0.6
3,332,251 + -0.5
3,332,259 - +0.7
3,332,259 - +1.1
3,332,259 - -0.8
3,332,259 - +0.8
3,332,259 - +0.7
3,332,259 - +0.4
3,332,259 - -1.0
3,332,259 - -0.6
3,332,259 - -1.0
3,332,259 - +0.8
3,332,259 - -2.5
3,332,263 + +0.1
3,332,281 - -0.6
3,332,281 - -1.1
3,332,284 + -0.4
3,332,284 + -0.3
3,332,284 + +0.5
3,332,285 + -0.1
3,332,292 - +0.0
3,332,293 - +0.4
3,332,335 + BWI76_RS16070 0.10 +0.8
3,332,338 - BWI76_RS16070 0.11 +0.5
3,332,387 + BWI76_RS16070 0.16 -0.0
3,332,387 + BWI76_RS16070 0.16 -0.1
3,332,387 + BWI76_RS16070 0.16 +1.0
3,332,410 + BWI76_RS16070 0.19 +2.2
3,332,465 - BWI76_RS16070 0.25 +1.3
3,332,467 - BWI76_RS16070 0.25 -1.2
3,332,713 - BWI76_RS16070 0.52 +0.3
3,332,927 + BWI76_RS16070 0.76 -1.1

Or see this region's nucleotide sequence