Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15470

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15465 and BWI76_RS15470 are separated by 428 nucleotidesBWI76_RS15470 and BWI76_RS15475 are separated by 172 nucleotides BWI76_RS15465: BWI76_RS15465 - hypothetical protein, at 3,239,298 to 3,239,909 _RS15465 BWI76_RS15470: BWI76_RS15470 - dipeptidyl carboxypeptidase II, at 3,240,338 to 3,242,380 _RS15470 BWI76_RS15475: BWI76_RS15475 - NAD(P)-dependent oxidoreductase, at 3,242,553 to 3,243,302 _RS15475 Position (kb) 3240 3241 3242 3243Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3239.345 kb on - strandat 3239.345 kb on - strandat 3239.351 kb on - strandat 3239.366 kb on - strandat 3239.366 kb on - strand, within BWI76_RS15465at 3239.367 kb on - strand, within BWI76_RS15465at 3239.385 kb on - strand, within BWI76_RS15465at 3239.425 kb on - strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strandat 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strandat 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.483 kb on + strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strandat 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.491 kb on - strand, within BWI76_RS15465at 3239.506 kb on - strand, within BWI76_RS15465at 3239.574 kb on + strand, within BWI76_RS15465at 3239.574 kb on + strand, within BWI76_RS15465at 3239.582 kb on - strand, within BWI76_RS15465at 3239.582 kb on - strandat 3239.582 kb on - strand, within BWI76_RS15465at 3239.587 kb on + strand, within BWI76_RS15465at 3239.587 kb on - strand, within BWI76_RS15465at 3239.587 kb on - strand, within BWI76_RS15465at 3239.587 kb on - strand, within BWI76_RS15465at 3239.593 kb on + strand, within BWI76_RS15465at 3239.595 kb on - strand, within BWI76_RS15465at 3239.595 kb on - strandat 3239.601 kb on - strand, within BWI76_RS15465at 3239.601 kb on - strand, within BWI76_RS15465at 3239.601 kb on - strand, within BWI76_RS15465at 3239.601 kb on - strand, within BWI76_RS15465at 3239.657 kb on + strand, within BWI76_RS15465at 3239.678 kb on - strandat 3239.685 kb on + strand, within BWI76_RS15465at 3239.697 kb on + strand, within BWI76_RS15465at 3239.705 kb on - strand, within BWI76_RS15465at 3239.721 kb on + strand, within BWI76_RS15465at 3239.726 kb on + strand, within BWI76_RS15465at 3239.729 kb on - strand, within BWI76_RS15465at 3239.739 kb on - strandat 3239.755 kb on + strand, within BWI76_RS15465at 3239.755 kb on + strand, within BWI76_RS15465at 3239.755 kb on + strand, within BWI76_RS15465at 3239.755 kb on + strand, within BWI76_RS15465at 3239.755 kb on + strand, within BWI76_RS15465at 3239.755 kb on + strand, within BWI76_RS15465at 3239.755 kb on + strand, within BWI76_RS15465at 3239.763 kb on - strand, within BWI76_RS15465at 3239.763 kb on - strand, within BWI76_RS15465at 3239.763 kb on - strand, within BWI76_RS15465at 3239.763 kb on - strandat 3239.806 kb on + strand, within BWI76_RS15465at 3239.806 kb on + strand, within BWI76_RS15465at 3239.811 kb on + strand, within BWI76_RS15465at 3239.833 kb on + strand, within BWI76_RS15465at 3239.833 kb on + strand, within BWI76_RS15465at 3239.841 kb on - strand, within BWI76_RS15465at 3239.887 kb on + strandat 3239.920 kb on + strandat 3239.920 kb on + strandat 3239.928 kb on - strandat 3239.928 kb on - strandat 3239.933 kb on + strandat 3239.964 kb on + strandat 3239.989 kb on + strandat 3240.019 kb on + strandat 3240.020 kb on - strandat 3240.051 kb on - strandat 3240.069 kb on + strandat 3240.110 kb on + strandat 3240.119 kb on - strandat 3240.142 kb on + strandat 3240.225 kb on + strandat 3240.303 kb on + strandat 3240.955 kb on + strand, within BWI76_RS15470at 3241.021 kb on - strand, within BWI76_RS15470at 3241.143 kb on + strand, within BWI76_RS15470at 3241.151 kb on - strand, within BWI76_RS15470at 3241.151 kb on - strand, within BWI76_RS15470at 3241.344 kb on + strand, within BWI76_RS15470at 3241.359 kb on + strand, within BWI76_RS15470at 3241.454 kb on - strand, within BWI76_RS15470at 3241.455 kb on - strand, within BWI76_RS15470at 3241.514 kb on - strand, within BWI76_RS15470at 3241.674 kb on - strand, within BWI76_RS15470at 3242.421 kb on + strandat 3242.517 kb on + strandat 3242.693 kb on + strand, within BWI76_RS15475at 3242.693 kb on + strand, within BWI76_RS15475at 3242.693 kb on + strand, within BWI76_RS15475at 3242.701 kb on - strand, within BWI76_RS15475at 3242.703 kb on + strand, within BWI76_RS15475at 3242.844 kb on - strand, within BWI76_RS15475at 3242.846 kb on - strand, within BWI76_RS15475at 3242.914 kb on - strand, within BWI76_RS15475at 3242.915 kb on + strand, within BWI76_RS15475at 3243.241 kb on - strandat 3243.323 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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3,239,345 - +3.3
3,239,345 - -1.7
3,239,351 - -1.4
3,239,366 - +3.9
3,239,366 - BWI76_RS15465 0.11 +0.5
3,239,367 - BWI76_RS15465 0.11 -0.9
3,239,385 - BWI76_RS15465 0.14 +1.5
3,239,425 - BWI76_RS15465 0.21 +0.5
3,239,483 + BWI76_RS15465 0.30 +0.4
3,239,483 + BWI76_RS15465 0.30 +0.3
3,239,483 + +1.5
3,239,483 + BWI76_RS15465 0.30 -0.9
3,239,483 + BWI76_RS15465 0.30 -0.5
3,239,483 + BWI76_RS15465 0.30 -0.7
3,239,483 + BWI76_RS15465 0.30 +0.9
3,239,483 + BWI76_RS15465 0.30 +0.5
3,239,483 + BWI76_RS15465 0.30 +0.7
3,239,483 + BWI76_RS15465 0.30 -2.3
3,239,483 + BWI76_RS15465 0.30 -1.5
3,239,483 + BWI76_RS15465 0.30 +2.0
3,239,483 + BWI76_RS15465 0.30 +0.5
3,239,483 + BWI76_RS15465 0.30 -0.5
3,239,483 + +0.5
3,239,483 + BWI76_RS15465 0.30 -1.3
3,239,483 + BWI76_RS15465 0.30 +0.1
3,239,483 + BWI76_RS15465 0.30 -0.8
3,239,483 + BWI76_RS15465 0.30 -0.8
3,239,491 - BWI76_RS15465 0.32 +0.5
3,239,491 - BWI76_RS15465 0.32 +1.5
3,239,491 - BWI76_RS15465 0.32 -0.5
3,239,491 - BWI76_RS15465 0.32 -0.1
3,239,491 - BWI76_RS15465 0.32 +0.9
3,239,491 - BWI76_RS15465 0.32 -0.1
3,239,491 - +0.5
3,239,491 - BWI76_RS15465 0.32 +1.7
3,239,491 - BWI76_RS15465 0.32 -0.1
3,239,491 - BWI76_RS15465 0.32 -0.1
3,239,491 - BWI76_RS15465 0.32 -0.5
3,239,491 - BWI76_RS15465 0.32 -1.6
3,239,491 - BWI76_RS15465 0.32 +1.5
3,239,491 - BWI76_RS15465 0.32 -0.5
3,239,491 - BWI76_RS15465 0.32 -0.6
3,239,491 - BWI76_RS15465 0.32 +1.5
3,239,491 - BWI76_RS15465 0.32 -1.8
3,239,506 - BWI76_RS15465 0.34 +0.4
3,239,574 + BWI76_RS15465 0.45 +0.5
3,239,574 + BWI76_RS15465 0.45 -1.1
3,239,582 - BWI76_RS15465 0.46 -0.1
3,239,582 - +0.5
3,239,582 - BWI76_RS15465 0.46 +0.5
3,239,587 + BWI76_RS15465 0.47 +0.2
3,239,587 - BWI76_RS15465 0.47 +0.4
3,239,587 - BWI76_RS15465 0.47 -1.1
3,239,587 - BWI76_RS15465 0.47 -0.5
3,239,593 + BWI76_RS15465 0.48 +0.5
3,239,595 - BWI76_RS15465 0.49 -3.2
3,239,595 - +0.5
3,239,601 - BWI76_RS15465 0.50 +0.0
3,239,601 - BWI76_RS15465 0.50 +1.5
3,239,601 - BWI76_RS15465 0.50 -0.5
3,239,601 - BWI76_RS15465 0.50 +0.3
3,239,657 + BWI76_RS15465 0.59 +0.2
3,239,678 - +0.5
3,239,685 + BWI76_RS15465 0.63 -1.1
3,239,697 + BWI76_RS15465 0.65 +1.5
3,239,705 - BWI76_RS15465 0.67 +0.3
3,239,721 + BWI76_RS15465 0.69 -0.1
3,239,726 + BWI76_RS15465 0.70 -2.4
3,239,729 - BWI76_RS15465 0.70 +1.5
3,239,739 - +1.5
3,239,755 + BWI76_RS15465 0.75 -0.4
3,239,755 + BWI76_RS15465 0.75 +0.1
3,239,755 + BWI76_RS15465 0.75 -0.1
3,239,755 + BWI76_RS15465 0.75 +0.5
3,239,755 + BWI76_RS15465 0.75 -1.1
3,239,755 + BWI76_RS15465 0.75 -0.1
3,239,755 + BWI76_RS15465 0.75 -0.8
3,239,763 - BWI76_RS15465 0.76 -0.8
3,239,763 - BWI76_RS15465 0.76 -1.6
3,239,763 - BWI76_RS15465 0.76 +1.1
3,239,763 - +1.5
3,239,806 + BWI76_RS15465 0.83 -2.6
3,239,806 + BWI76_RS15465 0.83 -3.7
3,239,811 + BWI76_RS15465 0.84 -0.9
3,239,833 + BWI76_RS15465 0.87 -1.6
3,239,833 + BWI76_RS15465 0.87 -0.8
3,239,841 - BWI76_RS15465 0.89 -2.4
3,239,887 + +0.2
3,239,920 + -0.8
3,239,920 + +1.0
3,239,928 - +1.9
3,239,928 - -1.9
3,239,933 + -1.8
3,239,964 + +1.5
3,239,989 + -0.4
3,240,019 + -0.0
3,240,020 - +0.1
3,240,051 - +0.5
3,240,069 + +0.7
3,240,110 + +0.0
3,240,119 - +0.5
3,240,142 + +1.2
3,240,225 + -0.1
3,240,303 + -0.2
3,240,955 + BWI76_RS15470 0.30 +0.9
3,241,021 - BWI76_RS15470 0.33 -2.9
3,241,143 + BWI76_RS15470 0.39 -1.3
3,241,151 - BWI76_RS15470 0.40 -0.6
3,241,151 - BWI76_RS15470 0.40 -0.5
3,241,344 + BWI76_RS15470 0.49 +1.1
3,241,359 + BWI76_RS15470 0.50 -1.0
3,241,454 - BWI76_RS15470 0.55 +1.1
3,241,455 - BWI76_RS15470 0.55 +0.7
3,241,514 - BWI76_RS15470 0.58 -0.5
3,241,674 - BWI76_RS15470 0.65 +0.7
3,242,421 + -0.7
3,242,517 + +0.8
3,242,693 + BWI76_RS15475 0.19 -1.0
3,242,693 + BWI76_RS15475 0.19 +0.9
3,242,693 + BWI76_RS15475 0.19 +0.0
3,242,701 - BWI76_RS15475 0.20 -0.6
3,242,703 + BWI76_RS15475 0.20 +2.3
3,242,844 - BWI76_RS15475 0.39 +1.8
3,242,846 - BWI76_RS15475 0.39 +0.8
3,242,914 - BWI76_RS15475 0.48 +1.4
3,242,915 + BWI76_RS15475 0.48 -0.8
3,243,241 - -0.4
3,243,323 + -2.2

Or see this region's nucleotide sequence