Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07560

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07555 and BWI76_RS07560 are separated by 108 nucleotidesBWI76_RS07560 and BWI76_RS07565 are separated by 308 nucleotidesBWI76_RS07565 and BWI76_RS07570 are separated by 24 nucleotides BWI76_RS07555: BWI76_RS07555 - EamA family transporter, at 1,599,676 to 1,600,566 _RS07555 BWI76_RS07560: BWI76_RS07560 - aminotransferase regulator domain-containing protein, at 1,600,675 to 1,602,009 _RS07560 BWI76_RS07565: BWI76_RS07565 - LysE type translocator family protein, at 1,602,318 to 1,602,959 _RS07565 BWI76_RS07570: BWI76_RS07570 - GntR family transcriptional regulator with, at 1,602,984 to 1,604,450 _RS07570 Position (kb) 1600 1601 1602 1603Strain fitness (log2 ratio) -2 -1 0 1at 1599.905 kb on + strand, within BWI76_RS07555at 1599.910 kb on + strand, within BWI76_RS07555at 1599.918 kb on - strand, within BWI76_RS07555at 1600.059 kb on - strandat 1600.094 kb on + strand, within BWI76_RS07555at 1600.130 kb on + strand, within BWI76_RS07555at 1600.294 kb on - strand, within BWI76_RS07555at 1600.516 kb on - strandat 1600.516 kb on - strandat 1600.618 kb on - strandat 1600.749 kb on - strandat 1600.771 kb on - strandat 1600.969 kb on + strand, within BWI76_RS07560at 1600.982 kb on - strand, within BWI76_RS07560at 1601.156 kb on + strand, within BWI76_RS07560at 1601.225 kb on - strand, within BWI76_RS07560at 1601.352 kb on - strand, within BWI76_RS07560at 1601.471 kb on - strand, within BWI76_RS07560at 1601.634 kb on + strand, within BWI76_RS07560at 1601.634 kb on + strand, within BWI76_RS07560at 1601.689 kb on + strand, within BWI76_RS07560at 1601.805 kb on + strand, within BWI76_RS07560at 1601.813 kb on - strand, within BWI76_RS07560at 1601.941 kb on + strandat 1601.970 kb on - strandat 1602.055 kb on + strandat 1602.233 kb on + strandat 1602.290 kb on + strandat 1602.290 kb on + strandat 1602.298 kb on - strandat 1602.298 kb on - strandat 1602.308 kb on - strandat 1602.334 kb on + strandat 1602.395 kb on + strand, within BWI76_RS07565at 1602.419 kb on + strand, within BWI76_RS07565at 1602.445 kb on - strand, within BWI76_RS07565at 1602.457 kb on + strand, within BWI76_RS07565at 1602.463 kb on + strand, within BWI76_RS07565at 1602.773 kb on + strand, within BWI76_RS07565at 1602.773 kb on + strand, within BWI76_RS07565at 1602.781 kb on - strand, within BWI76_RS07565at 1602.802 kb on - strand, within BWI76_RS07565at 1602.821 kb on - strand, within BWI76_RS07565at 1602.835 kb on + strand, within BWI76_RS07565

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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1,599,905 + BWI76_RS07555 0.26 +0.3
1,599,910 + BWI76_RS07555 0.26 +0.2
1,599,918 - BWI76_RS07555 0.27 -0.3
1,600,059 - -1.1
1,600,094 + BWI76_RS07555 0.47 -2.2
1,600,130 + BWI76_RS07555 0.51 -0.6
1,600,294 - BWI76_RS07555 0.69 +0.1
1,600,516 - +0.8
1,600,516 - +0.3
1,600,618 - +1.2
1,600,749 - +0.4
1,600,771 - -0.3
1,600,969 + BWI76_RS07560 0.22 +0.3
1,600,982 - BWI76_RS07560 0.23 +0.6
1,601,156 + BWI76_RS07560 0.36 +0.8
1,601,225 - BWI76_RS07560 0.41 +0.6
1,601,352 - BWI76_RS07560 0.51 +1.1
1,601,471 - BWI76_RS07560 0.60 +0.1
1,601,634 + BWI76_RS07560 0.72 +0.2
1,601,634 + BWI76_RS07560 0.72 +1.2
1,601,689 + BWI76_RS07560 0.76 -1.6
1,601,805 + BWI76_RS07560 0.85 -0.1
1,601,813 - BWI76_RS07560 0.85 -0.0
1,601,941 + +0.1
1,601,970 - +0.5
1,602,055 + -1.3
1,602,233 + -1.8
1,602,290 + -0.5
1,602,290 + +1.2
1,602,298 - -0.2
1,602,298 - -0.3
1,602,308 - -1.6
1,602,334 + -0.7
1,602,395 + BWI76_RS07565 0.12 -0.7
1,602,419 + BWI76_RS07565 0.16 +0.2
1,602,445 - BWI76_RS07565 0.20 -0.3
1,602,457 + BWI76_RS07565 0.22 +0.8
1,602,463 + BWI76_RS07565 0.23 -0.3
1,602,773 + BWI76_RS07565 0.71 +0.5
1,602,773 + BWI76_RS07565 0.71 -0.3
1,602,781 - BWI76_RS07565 0.72 -1.1
1,602,802 - BWI76_RS07565 0.75 -2.4
1,602,821 - BWI76_RS07565 0.78 +0.4
1,602,835 + BWI76_RS07565 0.81 +0.4

Or see this region's nucleotide sequence