Strain Fitness in Shewanella oneidensis MR-1 around SO4598

Experiment: Ferric citrate electron acceptor; ground control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ferric citrate electron acceptor; ground control
4,788,829	-		SO4597	0.33	+0.3
4,788,887	+		SO4597	0.37	+1.2
4,788,908	+		SO4597	0.39	-1.5
4,788,916	-		SO4597	0.39	-0.5
4,789,002	+		SO4597	0.45	-0.6
4,789,095	+		SO4597	0.52	+3.4
4,789,100	+		SO4597	0.52	+0.1
4,789,100	+		SO4597	0.52	-0.2
4,789,106	+		SO4597	0.53	+1.5
4,789,108	-		SO4597	0.53	-0.5
4,789,114	-		SO4597	0.53	-2.0
4,789,114	-		SO4597	0.53	+0.1
4,789,114	-		SO4597	0.53	+0.0
4,789,114	-		SO4597	0.53	+0.4
4,789,114	-		SO4597	0.53	+0.6
4,789,253	+		SO4597	0.63	-0.9
4,789,256	+		SO4597	0.63	-2.0
4,789,296	+		SO4597	0.66	+0.5
4,789,298	-		SO4597	0.66	+1.5
4,789,304	-		SO4597	0.66	-1.1
4,789,407	+		SO4597	0.74	-0.3
4,789,407	+		SO4597	0.74	-0.1
4,789,407	+		SO4597	0.74	-0.1
4,789,407	+		SO4597	0.74	+0.1
4,789,415	-		SO4597	0.74	+0.0
4,789,439	+		SO4597	0.76	+1.5
4,789,439	+		SO4597	0.76	-0.8
4,789,439	+		SO4597	0.76	+1.0
4,789,439	+		SO4597	0.76	+0.3
4,789,439	+		SO4597	0.76	+0.2
4,789,439	+		SO4597	0.76	-0.9
4,789,439	+		SO4597	0.76	+0.0
4,789,439	+		SO4597	0.76	+0.7
4,789,439	+		SO4597	0.76	+1.5
4,789,439	+		SO4597	0.76	-0.3
4,789,439	+		SO4597	0.76	-0.1
4,789,439	+		SO4597	0.76	-0.1
4,789,439	+		SO4597	0.76	+1.5
4,789,439	+		SO4597	0.76	-1.0
4,789,439	+		SO4597	0.76	-0.6
4,789,439	+		SO4597	0.76	+0.3
4,789,439	+		SO4597	0.76	-0.6
4,789,447	-		SO4597	0.77	+1.5
4,789,447	-		SO4597	0.77	+1.2
4,789,447	-		SO4597	0.77	-0.5
4,789,447	-		SO4597	0.77	-1.1
4,789,447	-		SO4597	0.77	-1.2
4,789,447	-		SO4597	0.77	+0.3
4,789,447	-		SO4597	0.77	+0.6
4,789,447	-		SO4597	0.77	+0.1
4,789,447	-		SO4597	0.77	-1.5
4,789,447	-		SO4597	0.77	-1.7
4,789,447	-		SO4597	0.77	-0.5
4,789,447	-		SO4597	0.77	+1.3
4,789,447	-		SO4597	0.77	+0.1
4,789,447	-		SO4597	0.77	-0.1
4,789,447	-		SO4597	0.77	-0.7
4,789,447	-		SO4597	0.77	+2.8
4,789,447	-		SO4597	0.77	-0.4
4,789,447	-		SO4597	0.77	-0.5
4,789,447	-		SO4597	0.77	+0.6
4,789,447	-		SO4597	0.77	-1.3
4,789,447	-		SO4597	0.77	+0.9
4,789,447	-		SO4597	0.77	+1.5
4,789,447	-		SO4597	0.77	+1.3
4,789,447	-		SO4597	0.77	-0.9
4,789,447	-		SO4597	0.77	+1.0
4,789,451	+		SO4597	0.77	+0.2
4,789,486	-		SO4597	0.79	+0.4
4,789,492	-		SO4597	0.80	-1.3
4,789,497	+		SO4597	0.80	-0.8
4,789,534	-		SO4597	0.83	+0.6
4,789,645	+				+0.7
4,789,658	-				+0.5
4,789,710	+				+2.0
4,789,719	-				+0.7
4,789,721	+				-1.1
4,789,734	+				+2.2
4,789,740	-				-0.4
4,789,742	-				-1.3
4,789,789	+				+0.5
4,789,826	+				+0.5
4,789,826	+				+0.6
4,789,834	-				+0.3
4,789,870	+				-0.7
4,789,873	+				-0.8
4,789,876	-				-0.2
4,789,876	-				+0.1
4,789,878	-				-1.5
4,789,879	-				-1.0
4,789,879	-				+0.1
4,789,899	-				-1.5
4,790,159	-		SO4598	0.12	-1.5
4,790,159	-		SO4598	0.12	+0.7
4,790,177	+		SO4598	0.12	-0.1
4,790,199	-		SO4598	0.13	+1.6
4,790,211	-		SO4598	0.13	+0.8
4,790,282	+		SO4598	0.16	-0.5
4,790,305	-		SO4598	0.16	-0.2
4,790,338	+		SO4598	0.17	-0.0
4,790,348	+		SO4598	0.18	+2.1
4,790,360	-		SO4598	0.18	-0.3
4,790,402	+		SO4598	0.20	-0.9
4,790,484	+		SO4598	0.22	+0.2
4,790,484	+		SO4598	0.22	+0.5
4,790,484	+		SO4598	0.22	+0.1
4,790,612	+		SO4598	0.26	+0.8
4,790,726	+		SO4598	0.30	-0.1
4,790,744	-		SO4598	0.30	+0.2
4,790,929	-		SO4598	0.36	-0.2
4,790,939	+		SO4598	0.37	+0.1
4,790,974	-		SO4598	0.38	+0.4
4,790,988	+		SO4598	0.38	+0.2
4,790,998	+		SO4598	0.39	-2.9
4,790,998	+		SO4598	0.39	+0.2
4,791,006	-		SO4598	0.39	+1.5
4,791,006	-		SO4598	0.39	+0.3
4,791,098	-		SO4598	0.42	+0.0
4,791,098	-		SO4598	0.42	+0.5
4,791,119	-		SO4598	0.42	+0.6
4,791,119	-		SO4598	0.42	+1.9
4,791,156	-		SO4598	0.44	-0.9
4,791,168	-		SO4598	0.44	+0.1
4,791,217	+		SO4598	0.46	-0.1
4,791,222	+		SO4598	0.46	+0.9
4,791,225	-		SO4598	0.46	-0.2
4,791,230	-		SO4598	0.46	-0.5
4,791,231	-		SO4598	0.46	+0.0
4,791,231	-		SO4598	0.46	-0.2
4,791,296	+		SO4598	0.48	+0.0
4,791,360	+		SO4598	0.50	-0.1
4,791,360	+		SO4598	0.50	-0.3
4,791,360	+		SO4598	0.50	+2.1
4,791,360	+		SO4598	0.50	+0.6
4,791,418	+		SO4598	0.52	-0.8
4,791,462	-		SO4598	0.53	+0.3
4,791,646	+		SO4598	0.59	+0.9
4,791,710	+		SO4598	0.61	-0.0
4,791,751	-		SO4598	0.63	+0.2
4,791,767	+		SO4598	0.63	-0.0
4,791,768	+		SO4598	0.63	+0.4
4,791,939	+		SO4598	0.69	-1.1
4,791,942	-		SO4598	0.69	-0.2
4,791,988	+		SO4598	0.70	+0.3
4,792,006	-		SO4598	0.71	-0.8
4,792,032	-		SO4598	0.71	+1.0
4,792,060	-		SO4598	0.72	-0.4
4,792,103	+		SO4598	0.74	-0.6
4,792,106	+		SO4598	0.74	-0.4
4,792,106	+		SO4598	0.74	+0.8
4,792,106	+		SO4598	0.74	+0.0
4,792,114	-		SO4598	0.74	-0.9
4,792,182	+		SO4598	0.76	+1.1
4,792,188	-		SO4598	0.76	+0.1
4,792,197	+		SO4598	0.77	+0.5
4,792,205	-		SO4598	0.77	-0.5
4,792,327	+		SO4598	0.81	-1.0
4,792,327	+		SO4598	0.81	-0.7
4,792,344	+		SO4598	0.81	-0.4
4,792,351	+		SO4598	0.82	-0.0
4,792,352	+		SO4598	0.82	-0.9
4,792,376	+		SO4598	0.82	+0.1
4,792,409	-		SO4598	0.83	+0.7
4,792,465	-		SO4598	0.85	+0.3
4,792,623	+				+0.8
4,792,661	+				+1.0
4,792,686	-				-0.9
4,792,704	-				-1.2
4,792,735	-				+0.0
4,792,802	-				+0.5
4,792,850	-				+0.4
4,792,915	-				-0.2
4,792,967	+				-0.4
4,793,048	+				+1.3
4,793,048	+				-1.1
4,793,056	-				-0.6
4,793,056	-				+0.7
4,793,056	-				+0.6
4,793,088	-				-0.3
4,793,126	-				+0.7
4,793,158	+				-1.0
4,793,161	-				+1.5
4,793,206	-				-0.7
4,793,268	+				-0.0
4,793,287	-				-2.1
4,793,415	+		SO4599	0.21	+0.6
4,793,526	+		SO4599	0.31	+0.9
4,793,562	+		SO4599	0.34	+2.5
4,793,608	+		SO4599	0.38	+0.5
4,793,608	+		SO4599	0.38	+0.8
4,793,616	-		SO4599	0.38	+0.0
4,793,616	-		SO4599	0.38	+1.0
4,793,616	-		SO4599	0.38	-0.4
4,793,718	+		SO4599	0.47	-1.2
4,793,726	-		SO4599	0.48	+0.1
4,793,744	-		SO4599	0.50	-0.2
4,793,793	-		SO4599	0.54	-0.6