Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16555

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
3,753,634	+		PFLU_RS16550	0.49	-0.7
3,753,635	-		PFLU_RS16550	0.49	-1.3
3,753,642	+		PFLU_RS16550	0.49	+0.8
3,753,643	-		PFLU_RS16550	0.49	+1.4
3,753,663	+		PFLU_RS16550	0.50	-0.7
3,753,663	+		PFLU_RS16550	0.50	-0.1
3,753,663	+		PFLU_RS16550	0.50	+0.2
3,753,683	+		PFLU_RS16550	0.52	+0.1
3,753,683	+		PFLU_RS16550	0.52	-0.4
3,753,683	+		PFLU_RS16550	0.52	+0.9
3,753,742	+		PFLU_RS16550	0.55	+1.8
3,753,742	+		PFLU_RS16550	0.55	+0.9
3,753,742	+		PFLU_RS16550	0.55	-0.9
3,753,742	+		PFLU_RS16550	0.55	-1.1
3,753,742	+		PFLU_RS16550	0.55	-2.5
3,753,742	+		PFLU_RS16550	0.55	+0.2
3,753,742	+		PFLU_RS16550	0.55	+2.3
3,753,742	+		PFLU_RS16550	0.55	+4.5
3,753,742	+		PFLU_RS16550	0.55	+3.6
3,753,743	-		PFLU_RS16550	0.55	-1.9
3,753,743	-		PFLU_RS16550	0.55	+2.2
3,753,743	-		PFLU_RS16550	0.55	+1.4
3,753,779	+		PFLU_RS16550	0.57	+5.2
3,753,787	+		PFLU_RS16550	0.58	-1.9
3,753,805	+		PFLU_RS16550	0.59	+0.6
3,753,805	+		PFLU_RS16550	0.59	-0.7
3,753,806	-		PFLU_RS16550	0.59	-1.4
3,753,886	+		PFLU_RS16550	0.64	+1.2
3,753,886	+		PFLU_RS16550	0.64	-2.7
3,753,924	+		PFLU_RS16550	0.66	-0.5
3,753,924	+		PFLU_RS16550	0.66	-1.1
3,753,925	-		PFLU_RS16550	0.66	-0.0
3,753,925	-		PFLU_RS16550	0.66	-0.2
3,753,926	+		PFLU_RS16550	0.66	-2.1
3,753,932	+		PFLU_RS16550	0.67	+1.9
3,753,933	-		PFLU_RS16550	0.67	-0.2
3,753,933	-		PFLU_RS16550	0.67	+1.7
3,754,087	+		PFLU_RS16550	0.76	-0.4
3,754,087	+		PFLU_RS16550	0.76	+1.4
3,754,087	+		PFLU_RS16550	0.76	+1.8
3,754,087	+		PFLU_RS16550	0.76	-2.2
3,754,088	-		PFLU_RS16550	0.76	-1.1
3,754,088	-		PFLU_RS16550	0.76	+0.9
3,754,088	-		PFLU_RS16550	0.76	-0.7
3,754,193	+		PFLU_RS16550	0.83	+0.2
3,754,193	+		PFLU_RS16550	0.83	-2.7
3,754,194	-		PFLU_RS16550	0.83	-1.1
3,754,194	-		PFLU_RS16550	0.83	+0.2
3,754,194	-		PFLU_RS16550	0.83	-1.7
3,754,194	-		PFLU_RS16550	0.83	+0.9
3,754,360	+				-0.7
3,754,360	+				+0.3
3,754,360	+				-2.5
3,754,361	-				-0.7
3,754,361	-				+4.1
3,754,361	-				-0.9
3,754,361	-				+0.3
3,754,361	-				-0.9
3,754,361	-				-0.7
3,754,361	-				+1.5
3,754,361	-				-0.7
3,754,362	+				+0.2
3,754,362	+				-1.2
3,754,362	+				-0.1
3,754,362	+				-0.4
3,754,362	+				+0.0
3,754,362	+				+0.3
3,754,363	-				+1.7
3,754,363	-				-0.1
3,754,363	-				+0.9
3,754,363	-				+1.9
3,754,363	-				-1.1
3,754,433	+				+0.3
3,754,498	+				-2.3
3,754,498	+				-0.7
3,754,498	+				-0.4
3,754,498	+				-1.8
3,754,498	+				-1.4
3,754,498	+				+1.2
3,754,499	-				-0.8
3,754,499	-				+2.9
3,754,499	-				-1.7
3,754,499	-				-0.7
3,754,499	-				+0.7
3,754,499	-				+1.9
3,754,499	-				+0.1
3,754,561	-				-2.1
3,754,577	+				+1.9
3,754,577	+				-0.7
3,754,577	+				-1.7
3,754,577	+				-0.1
3,754,577	+				-0.5
3,754,577	+				-0.9
3,754,577	+				-2.1
3,754,578	-				+1.6
3,754,578	-				-0.4
3,754,578	-				+0.6
3,754,578	-				-0.9
3,754,578	-				-0.4
3,754,579	+				+0.2
3,754,579	+				-1.4
3,754,579	+				+0.3
3,754,579	+				-1.7
3,754,579	+				-1.5
3,754,579	+				+0.3
3,754,579	+				+0.7
3,754,579	+				+1.9
3,754,579	+				-1.1
3,754,579	+				+1.9
3,754,579	+				+2.8
3,754,579	+				+1.2
3,754,579	+				-1.0
3,754,579	+				-1.9
3,754,579	+				-1.1
3,754,580	-				-0.5
3,754,580	-				-2.7
3,754,580	-				-2.8
3,754,580	-				-0.8
3,754,580	-				+0.3
3,754,580	-				-0.4
3,754,580	-				-1.5
3,754,580	-				-0.1
3,754,580	-				+0.3
3,754,580	-				-1.4
3,754,580	-				-1.5
3,754,580	-				+0.4
3,754,580	-				-1.7
3,754,580	-				+0.3
3,754,580	-				-1.3
3,754,580	-				+0.9
3,754,580	-				+0.8
3,754,597	+				-1.7
3,754,628	-		PFLU_RS16555	0.13	+0.6
3,754,697	-		PFLU_RS16555	0.19	-0.8
3,754,929	-		PFLU_RS16555	0.41	-1.4
3,754,970	+		PFLU_RS16555	0.45	-1.4
3,754,970	+		PFLU_RS16555	0.45	-0.9
3,754,971	-		PFLU_RS16555	0.45	-1.5
3,754,971	-		PFLU_RS16555	0.45	-1.8
3,754,971	-		PFLU_RS16555	0.45	-1.7
3,754,971	-		PFLU_RS16555	0.45	-1.1
3,755,024	+		PFLU_RS16555	0.50	+3.3
3,755,024	+		PFLU_RS16555	0.50	+1.3
3,755,024	+		PFLU_RS16555	0.50	+1.6
3,755,024	+		PFLU_RS16555	0.50	-0.9
3,755,027	+		PFLU_RS16555	0.50	-0.9
3,755,027	+		PFLU_RS16555	0.50	-1.8
3,755,027	+		PFLU_RS16555	0.50	-0.4
3,755,028	-		PFLU_RS16555	0.50	-0.1
3,755,130	+		PFLU_RS16555	0.60	-1.5
3,755,130	+		PFLU_RS16555	0.60	+0.7
3,755,130	+		PFLU_RS16555	0.60	-0.2
3,755,130	+		PFLU_RS16555	0.60	+1.1
3,755,130	+		PFLU_RS16555	0.60	-0.1
3,755,130	+		PFLU_RS16555	0.60	-2.3
3,755,130	+		PFLU_RS16555	0.60	-1.1
3,755,130	+		PFLU_RS16555	0.60	+0.8
3,755,130	+		PFLU_RS16555	0.60	+1.6
3,755,130	+		PFLU_RS16555	0.60	-1.9
3,755,130	+		PFLU_RS16555	0.60	+1.5
3,755,130	+		PFLU_RS16555	0.60	-0.1
3,755,130	+		PFLU_RS16555	0.60	+2.1
3,755,130	+		PFLU_RS16555	0.60	-0.5
3,755,130	+		PFLU_RS16555	0.60	-1.3
3,755,130	+		PFLU_RS16555	0.60	-0.9
3,755,130	+		PFLU_RS16555	0.60	+1.7
3,755,130	+		PFLU_RS16555	0.60	+5.5
3,755,130	+		PFLU_RS16555	0.60	-2.2
3,755,130	+		PFLU_RS16555	0.60	-0.3
3,755,130	+		PFLU_RS16555	0.60	+2.1
3,755,130	+		PFLU_RS16555	0.60	-1.5
3,755,130	+		PFLU_RS16555	0.60	-2.4
3,755,130	+		PFLU_RS16555	0.60	-0.4
3,755,130	+		PFLU_RS16555	0.60	+2.1
3,755,130	+		PFLU_RS16555	0.60	+0.7
3,755,130	+		PFLU_RS16555	0.60	-0.1
3,755,130	+		PFLU_RS16555	0.60	+0.3
3,755,130	+		PFLU_RS16555	0.60	-0.1
3,755,130	+		PFLU_RS16555	0.60	+0.3
3,755,130	+		PFLU_RS16555	0.60	-1.8
3,755,130	+		PFLU_RS16555	0.60	+1.9
3,755,130	+		PFLU_RS16555	0.60	-1.7
3,755,130	+		PFLU_RS16555	0.60	+0.4
3,755,131	-		PFLU_RS16555	0.60	+0.3
3,755,131	-		PFLU_RS16555	0.60	-1.8
3,755,131	-		PFLU_RS16555	0.60	-0.4
3,755,131	-		PFLU_RS16555	0.60	-1.8
3,755,131	-		PFLU_RS16555	0.60	+0.9
3,755,131	-		PFLU_RS16555	0.60	+0.2
3,755,131	-		PFLU_RS16555	0.60	-1.3
3,755,131	-		PFLU_RS16555	0.60	-0.4
3,755,131	-		PFLU_RS16555	0.60	-2.3
3,755,131	-		PFLU_RS16555	0.60	+1.1
3,755,131	-		PFLU_RS16555	0.60	+0.6
3,755,131	-		PFLU_RS16555	0.60	+0.0
3,755,131	-		PFLU_RS16555	0.60	-2.8
3,755,131	-		PFLU_RS16555	0.60	+0.9
3,755,131	-		PFLU_RS16555	0.60	+0.5
3,755,131	-		PFLU_RS16555	0.60	-0.9
3,755,131	-		PFLU_RS16555	0.60	-1.6
3,755,131	-		PFLU_RS16555	0.60	-0.9
3,755,131	-		PFLU_RS16555	0.60	-1.8
3,755,131	-		PFLU_RS16555	0.60	-2.3
3,755,131	-		PFLU_RS16555	0.60	-1.3
3,755,131	-		PFLU_RS16555	0.60	-2.5
3,755,131	-		PFLU_RS16555	0.60	-1.3
3,755,131	-		PFLU_RS16555	0.60	-0.3
3,755,131	-		PFLU_RS16555	0.60	+0.9
3,755,131	-		PFLU_RS16555	0.60	-0.8
3,755,131	-		PFLU_RS16555	0.60	-2.5
3,755,131	-		PFLU_RS16555	0.60	+1.9
3,755,131	-		PFLU_RS16555	0.60	-1.1
3,755,131	-		PFLU_RS16555	0.60	-1.3
3,755,131	-		PFLU_RS16555	0.60	+0.3
3,755,131	-		PFLU_RS16555	0.60	+0.9
3,755,131	-		PFLU_RS16555	0.60	-1.7
3,755,131	-		PFLU_RS16555	0.60	-0.5
3,755,131	-		PFLU_RS16555	0.60	+4.2
3,755,131	-		PFLU_RS16555	0.60	-0.4
3,755,131	-		PFLU_RS16555	0.60	-1.5
3,755,131	-		PFLU_RS16555	0.60	-0.4
3,755,131	-		PFLU_RS16555	0.60	-1.5
3,755,131	-		PFLU_RS16555	0.60	+0.8
3,755,131	-		PFLU_RS16555	0.60	-0.7
3,755,131	-		PFLU_RS16555	0.60	-2.2
3,755,132	+		PFLU_RS16555	0.60	+1.9
3,755,132	+		PFLU_RS16555	0.60	-0.1
3,755,132	+		PFLU_RS16555	0.60	+1.3
3,755,133	-		PFLU_RS16555	0.60	-1.8
3,755,133	-		PFLU_RS16555	0.60	+0.0
3,755,133	-		PFLU_RS16555	0.60	+0.9
3,755,133	-		PFLU_RS16555	0.60	+0.6
3,755,133	-		PFLU_RS16555	0.60	-1.1
3,755,133	-		PFLU_RS16555	0.60	-0.5
3,755,150	+		PFLU_RS16555	0.62	+1.9
3,755,150	+		PFLU_RS16555	0.62	+2.9
3,755,150	+		PFLU_RS16555	0.62	+0.9
3,755,151	-		PFLU_RS16555	0.62	-0.7
3,755,151	-		PFLU_RS16555	0.62	-0.2
3,755,151	-		PFLU_RS16555	0.62	-1.9
3,755,216	+		PFLU_RS16555	0.68	+0.3
3,755,273	+		PFLU_RS16555	0.73	-1.2
3,755,273	+		PFLU_RS16555	0.73	-1.7
3,755,274	-		PFLU_RS16555	0.73	-1.7
3,755,318	+		PFLU_RS16555	0.77	-0.2
3,755,318	+		PFLU_RS16555	0.77	-0.1
3,755,319	-		PFLU_RS16555	0.78	-2.1
3,755,347	+		PFLU_RS16555	0.80	+0.3
3,755,347	+		PFLU_RS16555	0.80	-0.4
3,755,347	+		PFLU_RS16555	0.80	-2.3
3,755,347	+		PFLU_RS16555	0.80	-1.0
3,755,348	-		PFLU_RS16555	0.80	+0.5
3,755,348	-		PFLU_RS16555	0.80	+1.5
3,755,348	-		PFLU_RS16555	0.80	-1.6
3,755,348	-		PFLU_RS16555	0.80	-0.3
3,755,348	-		PFLU_RS16555	0.80	-0.7
3,755,348	-		PFLU_RS16555	0.80	-1.0
3,755,348	-		PFLU_RS16555	0.80	+0.3
3,755,348	-		PFLU_RS16555	0.80	-1.5
3,755,348	-		PFLU_RS16555	0.80	+2.2
3,755,348	-		PFLU_RS16555	0.80	+2.6
3,755,369	+		PFLU_RS16555	0.82	+0.1
3,755,370	-		PFLU_RS16555	0.82	+1.2
3,755,384	+		PFLU_RS16555	0.84	-1.6
3,755,426	+		PFLU_RS16555	0.88	-1.5
3,755,426	+		PFLU_RS16555	0.88	-1.9
3,755,426	+		PFLU_RS16555	0.88	-1.3
3,755,427	-		PFLU_RS16555	0.88	+2.2
3,755,427	-		PFLU_RS16555	0.88	-1.3
3,755,427	-		PFLU_RS16555	0.88	-0.1
3,755,427	-		PFLU_RS16555	0.88	-1.8
3,755,427	-		PFLU_RS16555	0.88	+0.3
3,755,427	-		PFLU_RS16555	0.88	+1.6
3,755,427	-		PFLU_RS16555	0.88	+0.3
3,755,427	-		PFLU_RS16555	0.88	+1.5
3,755,481	+				+1.8
3,755,481	+				-1.0
3,755,481	+				-2.3
3,755,481	+				-1.1
3,755,481	+				+1.2
3,755,481	+				+0.2
3,755,481	+				+0.5
3,755,481	+				-1.4
3,755,482	-				-1.2
3,755,482	-				+0.7
3,755,482	-				+1.7
3,755,588	+				-1.4
3,755,588	+				-1.0
3,755,588	+				+0.7
3,755,588	+				-0.5
3,755,589	-				+1.2
3,755,589	-				-0.1
3,755,589	-				+0.4
3,755,689	+		PFLU_RS16560	0.32	+0.3
3,755,689	+		PFLU_RS16560	0.32	-0.1
3,755,689	+		PFLU_RS16560	0.32	+0.3
3,755,689	+		PFLU_RS16560	0.32	-1.7
3,755,689	+		PFLU_RS16560	0.32	-0.9
3,755,689	+		PFLU_RS16560	0.32	-1.5
3,755,689	+		PFLU_RS16560	0.32	-1.7
3,755,689	+		PFLU_RS16560	0.32	+3.1
3,755,689	+		PFLU_RS16560	0.32	-0.9
3,755,689	+		PFLU_RS16560	0.32	-0.5
3,755,689	+		PFLU_RS16560	0.32	+2.8
3,755,689	+		PFLU_RS16560	0.32	-0.7
3,755,689	+		PFLU_RS16560	0.32	+0.9
3,755,689	+		PFLU_RS16560	0.32	-0.2
3,755,689	+		PFLU_RS16560	0.32	-1.7
3,755,689	+		PFLU_RS16560	0.32	+0.3
3,755,689	+		PFLU_RS16560	0.32	+1.9
3,755,689	+		PFLU_RS16560	0.32	+1.2
3,755,690	-		PFLU_RS16560	0.32	-0.7
3,755,690	-		PFLU_RS16560	0.32	-1.1
3,755,690	-		PFLU_RS16560	0.32	+1.2
3,755,690	-		PFLU_RS16560	0.32	-2.2
3,755,690	-		PFLU_RS16560	0.32	-0.9
3,755,690	-		PFLU_RS16560	0.32	-2.8
3,755,690	-		PFLU_RS16560	0.32	+0.4
3,755,690	-		PFLU_RS16560	0.32	-1.5
3,755,690	-		PFLU_RS16560	0.32	-0.4
3,755,690	-		PFLU_RS16560	0.32	+0.0
3,755,690	-		PFLU_RS16560	0.32	-0.4
3,755,690	-		PFLU_RS16560	0.32	+0.3
3,755,690	-		PFLU_RS16560	0.32	-0.1
3,755,690	-		PFLU_RS16560	0.32	-0.4
3,755,690	-		PFLU_RS16560	0.32	-0.9
3,755,690	-		PFLU_RS16560	0.32	+1.3
3,755,869	+		PFLU_RS16560	0.74	+0.3
3,755,870	-		PFLU_RS16560	0.74	-0.1
3,755,878	+		PFLU_RS16560	0.76	-0.7
3,755,878	+		PFLU_RS16560	0.76	-1.0
3,755,878	+		PFLU_RS16560	0.76	+1.6
3,755,878	+		PFLU_RS16560	0.76	-0.8
3,755,879	-		PFLU_RS16560	0.76	-2.2
3,755,879	-		PFLU_RS16560	0.76	-1.0
3,755,879	-		PFLU_RS16560	0.76	-1.3
3,755,879	-		PFLU_RS16560	0.76	-0.4
3,755,925	+		PFLU_RS16560	0.87	-0.4
3,755,925	+		PFLU_RS16560	0.87	-0.6
3,755,925	+		PFLU_RS16560	0.87	-1.5
3,755,925	+		PFLU_RS16560	0.87	-2.0
3,755,925	+		PFLU_RS16560	0.87	-3.2
3,755,926	-		PFLU_RS16560	0.87	+1.6
3,755,926	-		PFLU_RS16560	0.87	-0.4
3,755,977	+				+0.9
3,755,977	+				-0.0
3,755,977	+				+1.6
3,755,978	-				-0.1
3,755,978	-				+0.9
3,755,978	-				+2.2
3,755,978	-				+1.1
3,756,013	+				+1.7
3,756,014	-				-2.2
3,756,014	-				-0.2
3,756,014	-				-1.4
3,756,020	+				+0.8
3,756,020	+				-0.1
3,756,021	-				+0.5
3,756,034	-				+1.2
3,756,057	-				-0.5
3,756,092	-				-1.4
3,756,104	+				-2.3
3,756,105	-				-2.5
3,756,117	+				+1.0
3,756,117	+				-1.1
3,756,118	-				-0.7
3,756,157	-				+0.3
3,756,159	+				-0.1
3,756,160	-				-1.7
3,756,168	+				+3.7
3,756,168	+				-1.3
3,756,169	-				-0.9
3,756,169	-				-2.0
3,756,207	+				+2.0
3,756,207	+				+1.0
3,756,208	-				+1.5
3,756,208	-				+1.1
3,756,208	-				+2.1
3,756,214	+				+0.0
3,756,214	+				-0.1
3,756,214	+				+0.1
3,756,214	+				-0.7
3,756,214	+				+1.9
3,756,214	+				+1.9
3,756,214	+				-0.7
3,756,214	+				+2.7
3,756,214	+				-2.6
3,756,214	+				+0.3
3,756,214	+				-1.9
3,756,215	-				+1.2
3,756,215	-				+1.9
3,756,215	-				-2.0
3,756,215	-				-0.1
3,756,215	-				+1.0
3,756,215	-				+0.3
3,756,215	-				-0.9
3,756,215	-				-1.1
3,756,215	-				+0.4
3,756,278	+				-0.9
3,756,278	+				+0.4
3,756,301	+		PFLU_RS30870	0.13	-2.2
3,756,302	-		PFLU_RS30870	0.13	-0.9
3,756,321	+		PFLU_RS30870	0.15	+1.7
3,756,387	+		PFLU_RS30870	0.24	-1.1