Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05140

Experiment: Betaine (C)(N); with MOPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with MOPS; with chloride
1,145,742	+		PFLU_RS05135	0.54	-2.5
1,145,742	+		PFLU_RS05135	0.54	-0.1
1,145,742	+		PFLU_RS05135	0.54	-0.4
1,145,742	+		PFLU_RS05135	0.54	-2.0
1,145,742	+		PFLU_RS05135	0.54	-1.1
1,145,743	-		PFLU_RS05135	0.54	-0.1
1,145,743	-		PFLU_RS05135	0.54	-2.8
1,145,743	-		PFLU_RS05135	0.54	-1.1
1,145,743	-		PFLU_RS05135	0.54	-1.4
1,145,743	-		PFLU_RS05135	0.54	-1.7
1,145,743	-		PFLU_RS05135	0.54	-0.7
1,145,743	-		PFLU_RS05135	0.54	-1.1
1,145,743	-		PFLU_RS05135	0.54	-1.9
1,145,743	-		PFLU_RS05135	0.54	-2.0
1,145,743	-		PFLU_RS05135	0.54	+0.1
1,145,743	-		PFLU_RS05135	0.54	-2.1
1,145,871	-		PFLU_RS05135	0.63	-1.3
1,145,951	+		PFLU_RS05135	0.69	+0.4
1,145,951	+		PFLU_RS05135	0.69	-0.4
1,145,952	-		PFLU_RS05135	0.69	-1.6
1,145,952	-		PFLU_RS05135	0.69	+1.7
1,145,954	+		PFLU_RS05135	0.69	-1.3
1,145,954	+		PFLU_RS05135	0.69	-0.9
1,145,954	+		PFLU_RS05135	0.69	-1.9
1,145,954	+		PFLU_RS05135	0.69	-1.1
1,145,954	+		PFLU_RS05135	0.69	-0.9
1,145,954	+		PFLU_RS05135	0.69	-0.9
1,145,954	+		PFLU_RS05135	0.69	-0.4
1,145,954	+		PFLU_RS05135	0.69	+0.4
1,145,954	+		PFLU_RS05135	0.69	-1.8
1,145,954	+		PFLU_RS05135	0.69	-0.7
1,145,954	+		PFLU_RS05135	0.69	+0.0
1,145,954	+		PFLU_RS05135	0.69	+0.4
1,145,954	+		PFLU_RS05135	0.69	-2.6
1,145,954	+		PFLU_RS05135	0.69	-1.1
1,145,955	-		PFLU_RS05135	0.69	+0.9
1,145,955	-		PFLU_RS05135	0.69	-1.5
1,145,955	-		PFLU_RS05135	0.69	-2.4
1,145,955	-		PFLU_RS05135	0.69	-0.4
1,145,955	-		PFLU_RS05135	0.69	-3.2
1,145,955	-		PFLU_RS05135	0.69	-1.0
1,145,955	-		PFLU_RS05135	0.69	+0.9
1,145,955	-		PFLU_RS05135	0.69	+0.1
1,145,955	-		PFLU_RS05135	0.69	+0.7
1,145,955	-		PFLU_RS05135	0.69	-2.1
1,145,955	-		PFLU_RS05135	0.69	-2.7
1,145,955	-		PFLU_RS05135	0.69	-1.8
1,145,987	+		PFLU_RS05135	0.71	-3.2
1,145,987	+		PFLU_RS05135	0.71	-0.7
1,145,987	+		PFLU_RS05135	0.71	+1.4
1,145,988	-		PFLU_RS05135	0.71	+1.4
1,146,168	+		PFLU_RS05135	0.84	-2.1
1,146,169	-		PFLU_RS05135	0.85	-1.8
1,146,358	+				-1.4
1,146,358	+				-0.9
1,146,358	+				-2.3
1,146,359	-				-2.5
1,146,384	+				-2.3
1,146,384	+				-1.6
1,146,385	-				+0.3
1,146,392	+				-1.3
1,146,392	+				-0.6
1,146,393	-				-1.3
1,146,406	+				-2.8
1,146,406	+				-0.2
1,146,407	-				+0.3
1,146,428	+				-0.7
1,146,429	-				-1.1
1,146,452	-				-3.0
1,146,485	+				-2.3
1,146,512	-				+3.2
1,146,546	+				+1.4
1,146,546	+				-1.1
1,146,546	+				-1.1
1,146,546	+				-0.9
1,146,546	+				-1.5
1,146,546	+				-0.7
1,146,546	+				+0.1
1,146,546	+				-0.1
1,146,546	+				-1.6
1,146,546	+				-2.1
1,146,546	+				-2.9
1,146,546	+				-1.4
1,146,546	+				+1.8
1,146,546	+				-0.1
1,146,546	+				-2.0
1,146,546	+				-2.3
1,146,546	+				-1.1
1,146,546	+				-0.1
1,146,547	-				+1.4
1,146,547	-				-1.6
1,146,547	-				-1.0
1,146,547	-				-0.6
1,146,547	-				-2.1
1,146,547	-				-2.5
1,146,547	-				-3.2
1,146,547	-				+0.0
1,146,547	-				-1.3
1,146,547	-				-0.7
1,146,547	-				-0.1
1,146,547	-				+3.4
1,146,547	-				-1.7
1,146,547	-				-1.1
1,146,547	-				+1.3
1,146,547	-				-1.7
1,146,594	-				-0.3
1,146,703	+		PFLU_RS05140	0.19	-1.5
1,146,704	-		PFLU_RS05140	0.20	-0.2
1,146,753	+		PFLU_RS05140	0.25	-0.7
1,146,754	-		PFLU_RS05140	0.25	-1.1
1,146,979	-		PFLU_RS05140	0.49	-2.0
1,147,045	+		PFLU_RS05140	0.55	-2.0
1,147,045	+		PFLU_RS05140	0.55	-1.3
1,147,045	+		PFLU_RS05140	0.55	-1.0
1,147,046	-		PFLU_RS05140	0.56	-1.3
1,147,110	-		PFLU_RS05140	0.62	-1.2
1,147,110	-		PFLU_RS05140	0.62	-0.7
1,147,128	+		PFLU_RS05140	0.64	+1.3
1,147,128	+		PFLU_RS05140	0.64	-0.6
1,147,128	+		PFLU_RS05140	0.64	-2.5
1,147,128	+		PFLU_RS05140	0.64	-2.2
1,147,128	+		PFLU_RS05140	0.64	-1.9
1,147,128	+		PFLU_RS05140	0.64	-2.9
1,147,128	+		PFLU_RS05140	0.64	-1.1
1,147,129	-		PFLU_RS05140	0.64	-1.8
1,147,129	-		PFLU_RS05140	0.64	-3.2
1,147,129	-		PFLU_RS05140	0.64	-1.1
1,147,129	-		PFLU_RS05140	0.64	-0.3
1,147,129	-		PFLU_RS05140	0.64	-1.6
1,147,129	-		PFLU_RS05140	0.64	-2.2
1,147,129	-		PFLU_RS05140	0.64	-1.0
1,147,129	-		PFLU_RS05140	0.64	-2.1
1,147,129	-		PFLU_RS05140	0.64	+0.7
1,147,129	-		PFLU_RS05140	0.64	-3.1
1,147,134	+		PFLU_RS05140	0.65	+0.4
1,147,134	+		PFLU_RS05140	0.65	-2.4
1,147,135	-		PFLU_RS05140	0.65	-2.5
1,147,152	+		PFLU_RS05140	0.67	-1.7
1,147,152	+		PFLU_RS05140	0.67	-1.4
1,147,153	-		PFLU_RS05140	0.67	-0.1
1,147,153	-		PFLU_RS05140	0.67	-1.7
1,147,153	-		PFLU_RS05140	0.67	-0.6
1,147,153	-		PFLU_RS05140	0.67	+1.6
1,147,199	+		PFLU_RS05140	0.72	+1.2
1,147,199	+		PFLU_RS05140	0.72	-2.5
1,147,199	+		PFLU_RS05140	0.72	+0.2
1,147,199	+		PFLU_RS05140	0.72	-1.9
1,147,199	+		PFLU_RS05140	0.72	-0.4
1,147,199	+		PFLU_RS05140	0.72	-0.9
1,147,199	+		PFLU_RS05140	0.72	+0.4
1,147,199	+		PFLU_RS05140	0.72	-1.7
1,147,199	+		PFLU_RS05140	0.72	-1.7
1,147,199	+		PFLU_RS05140	0.72	-0.9
1,147,199	+		PFLU_RS05140	0.72	-1.6
1,147,200	-		PFLU_RS05140	0.72	+0.1
1,147,200	-		PFLU_RS05140	0.72	+0.9
1,147,200	-		PFLU_RS05140	0.72	-2.1
1,147,200	-		PFLU_RS05140	0.72	-0.1
1,147,200	-		PFLU_RS05140	0.72	+0.1
1,147,200	-		PFLU_RS05140	0.72	+0.7
1,147,200	-		PFLU_RS05140	0.72	+2.4
1,147,200	-		PFLU_RS05140	0.72	-1.1
1,147,200	-		PFLU_RS05140	0.72	+0.9
1,147,200	-		PFLU_RS05140	0.72	-0.7
1,147,200	-		PFLU_RS05140	0.72	-1.1
1,147,200	-		PFLU_RS05140	0.72	-1.3
1,147,200	-		PFLU_RS05140	0.72	-0.6
1,147,344	+		PFLU_RS05140	0.87	-1.1
1,147,344	+		PFLU_RS05140	0.87	+0.0
1,147,344	+		PFLU_RS05140	0.87	-0.1
1,147,344	+		PFLU_RS05140	0.87	-2.1
1,147,344	+		PFLU_RS05140	0.87	+0.9
1,147,345	-		PFLU_RS05140	0.87	+0.1
1,147,345	-		PFLU_RS05140	0.87	-2.3
1,147,356	+		PFLU_RS05140	0.88	-1.3
1,147,356	+		PFLU_RS05140	0.88	-0.5
1,147,356	+		PFLU_RS05140	0.88	-0.5
1,147,356	+		PFLU_RS05140	0.88	-1.4
1,147,357	-		PFLU_RS05140	0.88	-0.6
1,147,357	-		PFLU_RS05140	0.88	-1.5
1,147,464	+				-2.3
1,147,464	+				+0.1
1,147,464	+				+1.7
1,147,464	+				+1.7
1,147,464	+				-2.3
1,147,464	+				-0.9
1,147,465	-				+0.1
1,147,465	-				-1.9
1,147,465	-				+0.2
1,147,465	-				+1.4
1,147,465	-				-1.1
1,147,465	-				-0.2
1,147,465	-				+0.3
1,147,480	+				+0.2
1,147,480	+				+0.2
1,147,480	+				-0.9
1,147,481	-				-0.4
1,147,490	+				+2.9
1,147,490	+				+3.0
1,147,490	+				-0.4
1,147,491	-				-1.1
1,147,508	-				-1.6
1,147,508	-				+0.2
1,147,508	-				+0.9
1,147,542	+				+1.4
1,147,543	-				+1.9
1,147,543	-				-1.3
1,147,543	-				+1.6
1,147,554	+				-1.6
1,147,554	+				-2.5
1,147,554	+				+0.2
1,147,554	+				+0.5
1,147,555	-				+1.5
1,147,555	-				+1.5
1,147,555	-				-1.9
1,147,600	+				+0.4
1,147,600	+				+0.0
1,147,600	+				+1.2
1,147,600	+				+1.1
1,147,601	-				-1.4
1,147,658	+				+1.4
1,147,658	+				-0.9
1,147,659	-				-0.4
1,147,659	-				-1.2
1,147,667	+				+0.6
1,147,668	-				-0.1
1,147,679	+				-0.1
1,147,679	+				-0.2
1,147,679	+				+0.9
1,147,680	-				-0.2
1,147,680	-				+0.9
1,147,680	-				+0.3
1,147,680	-				-1.8
1,147,680	-				+2.7
1,147,680	-				-1.5
1,147,680	-				-0.8
1,147,709	+				+0.1
1,147,709	+				+0.2
1,147,710	-				-0.6
1,147,710	-				+2.0
1,147,710	-				+0.9
1,147,742	-		PFLU_RS05145	0.15	-0.2
1,147,742	-		PFLU_RS05145	0.15	-1.1
1,147,742	-		PFLU_RS05145	0.15	+2.1
1,147,745	+		PFLU_RS05145	0.16	+1.9
1,147,745	+		PFLU_RS05145	0.16	+1.9
1,147,745	+		PFLU_RS05145	0.16	+0.9
1,147,745	+		PFLU_RS05145	0.16	+0.1
1,147,745	+		PFLU_RS05145	0.16	+1.1
1,147,745	+		PFLU_RS05145	0.16	-0.5
1,147,745	+		PFLU_RS05145	0.16	-0.0
1,147,745	+		PFLU_RS05145	0.16	+1.9
1,147,745	+		PFLU_RS05145	0.16	-1.1
1,147,745	+		PFLU_RS05145	0.16	-2.0
1,147,745	+		PFLU_RS05145	0.16	+3.2
1,147,745	+		PFLU_RS05145	0.16	+2.0
1,147,745	+		PFLU_RS05145	0.16	+0.5
1,147,745	+		PFLU_RS05145	0.16	+0.4
1,147,745	+		PFLU_RS05145	0.16	-0.9
1,147,745	+		PFLU_RS05145	0.16	-2.3
1,147,745	+		PFLU_RS05145	0.16	+0.1
1,147,745	+		PFLU_RS05145	0.16	+1.4
1,147,745	+		PFLU_RS05145	0.16	+1.0
1,147,745	+		PFLU_RS05145	0.16	-0.9
1,147,745	+		PFLU_RS05145	0.16	+0.4
1,147,745	+		PFLU_RS05145	0.16	-0.6
1,147,745	+		PFLU_RS05145	0.16	-0.1
1,147,745	+		PFLU_RS05145	0.16	+0.1
1,147,745	+		PFLU_RS05145	0.16	+0.3
1,147,745	+		PFLU_RS05145	0.16	+0.0
1,147,745	+		PFLU_RS05145	0.16	-1.7
1,147,745	+		PFLU_RS05145	0.16	+0.9
1,147,745	+		PFLU_RS05145	0.16	-2.4
1,147,745	+		PFLU_RS05145	0.16	+0.3
1,147,745	+		PFLU_RS05145	0.16	-0.9
1,147,745	+		PFLU_RS05145	0.16	+0.4
1,147,745	+		PFLU_RS05145	0.16	-2.5
1,147,745	+		PFLU_RS05145	0.16	+0.5
1,147,745	+		PFLU_RS05145	0.16	-1.1
1,147,746	-		PFLU_RS05145	0.16	+1.1
1,147,746	-		PFLU_RS05145	0.16	-1.5
1,147,746	-		PFLU_RS05145	0.16	+0.9
1,147,746	-		PFLU_RS05145	0.16	+1.6
1,147,746	-		PFLU_RS05145	0.16	-1.4
1,147,746	-		PFLU_RS05145	0.16	-0.1
1,147,746	-		PFLU_RS05145	0.16	+2.0
1,147,746	-		PFLU_RS05145	0.16	+0.9
1,147,746	-		PFLU_RS05145	0.16	-1.5
1,147,746	-		PFLU_RS05145	0.16	-0.6
1,147,746	-		PFLU_RS05145	0.16	+1.6
1,147,746	-		PFLU_RS05145	0.16	+3.7
1,147,746	-		PFLU_RS05145	0.16	+0.3
1,147,746	-		PFLU_RS05145	0.16	+2.0
1,147,746	-		PFLU_RS05145	0.16	+0.7
1,147,746	-		PFLU_RS05145	0.16	-0.9
1,147,746	-		PFLU_RS05145	0.16	-0.4
1,147,746	-		PFLU_RS05145	0.16	-0.9
1,147,746	-		PFLU_RS05145	0.16	+0.6
1,147,746	-		PFLU_RS05145	0.16	-2.4
1,147,746	-		PFLU_RS05145	0.16	-1.5
1,147,746	-		PFLU_RS05145	0.16	+0.4
1,147,746	-		PFLU_RS05145	0.16	-0.1
1,147,746	-		PFLU_RS05145	0.16	+1.4
1,147,746	-		PFLU_RS05145	0.16	+0.4
1,147,746	-		PFLU_RS05145	0.16	+0.8
1,147,746	-		PFLU_RS05145	0.16	-1.4
1,147,746	-		PFLU_RS05145	0.16	+2.2
1,147,746	-		PFLU_RS05145	0.16	+1.7
1,147,746	-		PFLU_RS05145	0.16	+0.1
1,147,746	-		PFLU_RS05145	0.16	+0.4
1,147,746	-		PFLU_RS05145	0.16	-2.3
1,147,748	+		PFLU_RS05145	0.17	-2.3
1,147,748	+		PFLU_RS05145	0.17	+0.3
1,147,748	+		PFLU_RS05145	0.17	-2.3
1,147,748	+		PFLU_RS05145	0.17	+3.5
1,147,749	-		PFLU_RS05145	0.17	-2.0
1,147,749	-		PFLU_RS05145	0.17	+0.1
1,147,749	-		PFLU_RS05145	0.17	+0.0
1,147,749	-		PFLU_RS05145	0.17	+0.6
1,147,749	-		PFLU_RS05145	0.17	-0.6
1,147,749	-		PFLU_RS05145	0.17	-1.3
1,147,749	-		PFLU_RS05145	0.17	+0.2
1,147,749	-		PFLU_RS05145	0.17	+0.1
1,147,749	-		PFLU_RS05145	0.17	+1.3
1,147,749	-		PFLU_RS05145	0.17	+2.6
1,147,774	-		PFLU_RS05145	0.23	-0.1
1,147,774	-		PFLU_RS05145	0.23	+0.9
1,147,774	-		PFLU_RS05145	0.23	-1.4
1,147,803	+		PFLU_RS05145	0.30	+1.7
1,147,804	-		PFLU_RS05145	0.30	+0.3
1,147,804	-		PFLU_RS05145	0.30	+2.0
1,147,846	+		PFLU_RS05145	0.40	+0.9
1,147,846	+		PFLU_RS05145	0.40	-1.0
1,147,846	+		PFLU_RS05145	0.40	-0.4
1,147,846	+		PFLU_RS05145	0.40	+1.4
1,147,847	-		PFLU_RS05145	0.41	-1.3
1,147,847	-		PFLU_RS05145	0.41	+0.0
1,147,847	-		PFLU_RS05145	0.41	-0.1
1,147,847	-		PFLU_RS05145	0.41	+2.9
1,147,847	-		PFLU_RS05145	0.41	+1.1
1,147,895	-		PFLU_RS05145	0.52	-0.6
1,148,081	+				-0.4
1,148,082	-				-0.9
1,148,151	+				-1.6
1,148,151	+				-2.1
1,148,152	-				-2.0
1,148,152	-				-1.9
1,148,270	-				+2.5
1,148,270	-				-1.4
1,148,270	-				+0.1
1,148,351	+		PFLU_RS05150	0.13	-1.9
1,148,352	-		PFLU_RS05150	0.13	-2.1
1,148,352	-		PFLU_RS05150	0.13	-0.2
1,148,352	-		PFLU_RS05150	0.13	+0.8
1,148,352	-		PFLU_RS05150	0.13	-2.0
1,148,352	-		PFLU_RS05150	0.13	-1.4