Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26755 and BWI76_RS26760 are separated by 221 nucleotides BWI76_RS26760 and BWI76_RS26765 are separated by 154 nucleotides
BWI76_RS26755: BWI76_RS26755 - peptidase M16, at 5,540,764 to 5,542,269
_RS26755
BWI76_RS26760: BWI76_RS26760 - C4-dicarboxylate transport protein DctA <small>(from data)</small>, at 5,542,491 to 5,543,777
_RS26760
BWI76_RS26765: BWI76_RS26765 - phosphodiesterase, at 5,543,932 to 5,545,938
_RS26765
Position (kb) 5542
5543
5544 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5541.620 kb on - strand, within BWI76_RS26755 at 5541.951 kb on + strand, within BWI76_RS26755 at 5541.961 kb on - strand, within BWI76_RS26755 at 5541.987 kb on - strand, within BWI76_RS26755 at 5541.987 kb on - strand, within BWI76_RS26755 at 5541.987 kb on - strand, within BWI76_RS26755 at 5542.097 kb on - strand, within BWI76_RS26755 at 5542.134 kb on - strand at 5542.134 kb on - strand at 5542.211 kb on - strand at 5542.270 kb on - strand at 5542.359 kb on - strand at 5542.413 kb on - strand at 5542.531 kb on - strand at 5542.561 kb on - strand at 5542.568 kb on + strand at 5543.274 kb on + strand at 5543.321 kb on - strand, within BWI76_RS26760 at 5543.402 kb on - strand, within BWI76_RS26760 at 5543.446 kb on + strand, within BWI76_RS26760 at 5543.513 kb on + strand, within BWI76_RS26760 at 5543.516 kb on + strand, within BWI76_RS26760 at 5543.554 kb on - strand, within BWI76_RS26760 at 5543.616 kb on + strand, within BWI76_RS26760 at 5543.648 kb on + strand, within BWI76_RS26760 at 5543.672 kb on - strand at 5543.738 kb on - strand at 5543.753 kb on + strand at 5543.851 kb on - strand at 5544.009 kb on - strand at 5544.114 kb on + strand at 5544.122 kb on - strand at 5544.230 kb on - strand, within BWI76_RS26765 at 5544.235 kb on - strand, within BWI76_RS26765 at 5544.240 kb on - strand, within BWI76_RS26765 at 5544.614 kb on - strand, within BWI76_RS26765 at 5544.636 kb on - strand, within BWI76_RS26765 at 5544.735 kb on + strand, within BWI76_RS26765 at 5544.743 kb on - strand, within BWI76_RS26765
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 5,541,620 - BWI76_RS26755 0.57 +1.4 5,541,951 + BWI76_RS26755 0.79 +0.4 5,541,961 - BWI76_RS26755 0.79 -1.8 5,541,987 - BWI76_RS26755 0.81 +0.3 5,541,987 - BWI76_RS26755 0.81 +0.8 5,541,987 - BWI76_RS26755 0.81 -2.9 5,542,097 - BWI76_RS26755 0.89 +0.7 5,542,134 - -3.1 5,542,134 - +0.5 5,542,211 - -0.2 5,542,270 - +1.4 5,542,359 - -0.6 5,542,413 - -1.0 5,542,531 - +0.7 5,542,561 - +1.7 5,542,568 + +0.8 5,543,274 + +0.6 5,543,321 - BWI76_RS26760 0.64 -1.1 5,543,402 - BWI76_RS26760 0.71 -1.6 5,543,446 + BWI76_RS26760 0.74 +1.4 5,543,513 + BWI76_RS26760 0.79 -2.4 5,543,516 + BWI76_RS26760 0.80 -0.8 5,543,554 - BWI76_RS26760 0.83 -2.2 5,543,616 + BWI76_RS26760 0.87 -0.7 5,543,648 + BWI76_RS26760 0.90 -2.5 5,543,672 - -0.1 5,543,738 - -0.4 5,543,753 + -3.3 5,543,851 - +0.2 5,544,009 - -1.0 5,544,114 + +1.7 5,544,122 - -0.6 5,544,230 - BWI76_RS26765 0.15 +0.8 5,544,235 - BWI76_RS26765 0.15 -0.7 5,544,240 - BWI76_RS26765 0.15 -0.4 5,544,614 - BWI76_RS26765 0.34 +0.9 5,544,636 - BWI76_RS26765 0.35 +0.2 5,544,735 + BWI76_RS26765 0.40 -1.3 5,544,743 - BWI76_RS26765 0.40 +0.4
Or see this region's nucleotide sequence