Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24950 and BWI76_RS24955 are separated by 55 nucleotides BWI76_RS24955 and BWI76_RS24960 overlap by 14 nucleotides BWI76_RS24960 and BWI76_RS24965 overlap by 7 nucleotides BWI76_RS24965 and BWI76_RS24970 are separated by 221 nucleotides
BWI76_RS24950: BWI76_RS24950 - hypothetical protein, at 5,197,656 to 5,198,099
_RS24950
BWI76_RS24955: BWI76_RS24955 - hypothetical protein, at 5,198,155 to 5,198,439
_RS24955
BWI76_RS24960: BWI76_RS24960 - N-acetyltransferase, at 5,198,426 to 5,198,929
_RS24960
BWI76_RS24965: BWI76_RS24965 - SCP2 domain-containing protein, at 5,198,923 to 5,199,447
_RS24965
BWI76_RS24970: BWI76_RS24970 - peptidase U32, at 5,199,669 to 5,200,664
_RS24970
Position (kb) 5198
5199
5200 Strain fitness (log2 ratio) -2
-1
0
1 at 5198.105 kb on - strand at 5198.121 kb on + strand at 5198.124 kb on + strand at 5198.129 kb on + strand at 5198.129 kb on + strand at 5198.137 kb on - strand at 5198.231 kb on + strand, within BWI76_RS24955 at 5198.344 kb on - strand, within BWI76_RS24955 at 5198.656 kb on + strand, within BWI76_RS24960 at 5198.709 kb on + strand, within BWI76_RS24960 at 5198.750 kb on + strand, within BWI76_RS24960 at 5198.771 kb on + strand, within BWI76_RS24960 at 5198.796 kb on + strand, within BWI76_RS24960 at 5199.021 kb on - strand, within BWI76_RS24965 at 5199.072 kb on + strand, within BWI76_RS24965 at 5199.380 kb on + strand, within BWI76_RS24965 at 5199.388 kb on - strand, within BWI76_RS24965 at 5199.416 kb on - strand at 5199.564 kb on + strand at 5199.685 kb on - strand at 5199.826 kb on - strand, within BWI76_RS24970 at 5199.867 kb on + strand, within BWI76_RS24970 at 5199.869 kb on - strand, within BWI76_RS24970 at 5200.138 kb on - strand, within BWI76_RS24970 at 5200.429 kb on + strand, within BWI76_RS24970 at 5200.437 kb on - strand, within BWI76_RS24970 at 5200.437 kb on - strand, within BWI76_RS24970
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 5,198,105 - -0.7 5,198,121 + -0.3 5,198,124 + -0.1 5,198,129 + -0.2 5,198,129 + +1.0 5,198,137 - -0.3 5,198,231 + BWI76_RS24955 0.27 +0.3 5,198,344 - BWI76_RS24955 0.66 +1.3 5,198,656 + BWI76_RS24960 0.46 +0.8 5,198,709 + BWI76_RS24960 0.56 -1.6 5,198,750 + BWI76_RS24960 0.64 +0.0 5,198,771 + BWI76_RS24960 0.68 +0.3 5,198,796 + BWI76_RS24960 0.73 -2.0 5,199,021 - BWI76_RS24965 0.19 +1.4 5,199,072 + BWI76_RS24965 0.28 -2.7 5,199,380 + BWI76_RS24965 0.87 -0.8 5,199,388 - BWI76_RS24965 0.89 -1.1 5,199,416 - -2.3 5,199,564 + -0.3 5,199,685 - -0.1 5,199,826 - BWI76_RS24970 0.16 -0.7 5,199,867 + BWI76_RS24970 0.20 +0.3 5,199,869 - BWI76_RS24970 0.20 +1.4 5,200,138 - BWI76_RS24970 0.47 +0.7 5,200,429 + BWI76_RS24970 0.76 -0.2 5,200,437 - BWI76_RS24970 0.77 +0.3 5,200,437 - BWI76_RS24970 0.77 -0.0
Or see this region's nucleotide sequence