Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23835 and BWI76_RS23840 are separated by 126 nucleotides BWI76_RS23840 and BWI76_RS23845 are separated by 162 nucleotides BWI76_RS23845 and BWI76_RS23850 are separated by 50 nucleotides
BWI76_RS23835: BWI76_RS23835 - folate-binding protein, at 4,974,221 to 4,975,204
_RS23835
BWI76_RS23840: BWI76_RS23840 - hemolysin III family protein, at 4,975,331 to 4,975,990
_RS23840
BWI76_RS23845: BWI76_RS23845 - ASCH domain-containing protein, at 4,976,153 to 4,976,464
_RS23845
BWI76_RS23850: BWI76_RS23850 - MurR/RpiR family transcriptional regulator, at 4,976,515 to 4,977,243
_RS23850
Position (kb) 4975
4976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4975.300 kb on + strand at 4975.337 kb on - strand at 4975.382 kb on + strand at 4975.382 kb on + strand at 4975.387 kb on + strand at 4975.387 kb on + strand at 4975.387 kb on + strand at 4975.395 kb on - strand at 4975.395 kb on - strand at 4975.483 kb on + strand, within BWI76_RS23840 at 4975.483 kb on + strand, within BWI76_RS23840 at 4975.483 kb on + strand, within BWI76_RS23840 at 4975.483 kb on + strand, within BWI76_RS23840 at 4975.483 kb on + strand, within BWI76_RS23840 at 4975.488 kb on + strand, within BWI76_RS23840 at 4975.491 kb on - strand, within BWI76_RS23840 at 4975.600 kb on + strand, within BWI76_RS23840 at 4975.690 kb on + strand, within BWI76_RS23840 at 4975.843 kb on - strand, within BWI76_RS23840 at 4975.920 kb on - strand, within BWI76_RS23840 at 4975.987 kb on + strand at 4976.034 kb on - strand at 4976.213 kb on + strand, within BWI76_RS23845 at 4976.242 kb on - strand, within BWI76_RS23845 at 4976.251 kb on - strand, within BWI76_RS23845 at 4976.350 kb on + strand, within BWI76_RS23845 at 4976.358 kb on - strand, within BWI76_RS23845 at 4976.358 kb on - strand, within BWI76_RS23845 at 4976.358 kb on - strand, within BWI76_RS23845 at 4976.361 kb on + strand, within BWI76_RS23845 at 4976.412 kb on + strand, within BWI76_RS23845 at 4976.451 kb on - strand at 4976.484 kb on - strand at 4976.516 kb on + strand at 4976.517 kb on - strand at 4976.538 kb on - strand at 4976.544 kb on + strand at 4976.563 kb on + strand at 4976.567 kb on + strand at 4976.571 kb on - strand at 4976.593 kb on + strand, within BWI76_RS23850 at 4976.604 kb on - strand, within BWI76_RS23850 at 4976.604 kb on - strand, within BWI76_RS23850 at 4976.612 kb on + strand, within BWI76_RS23850 at 4976.638 kb on + strand, within BWI76_RS23850 at 4976.638 kb on + strand, within BWI76_RS23850 at 4976.640 kb on + strand, within BWI76_RS23850 at 4976.640 kb on - strand, within BWI76_RS23850 at 4976.648 kb on - strand, within BWI76_RS23850 at 4976.653 kb on + strand, within BWI76_RS23850 at 4976.653 kb on + strand, within BWI76_RS23850 at 4976.653 kb on + strand, within BWI76_RS23850 at 4976.671 kb on + strand, within BWI76_RS23850 at 4976.671 kb on + strand, within BWI76_RS23850 at 4976.673 kb on + strand, within BWI76_RS23850 at 4976.673 kb on + strand at 4976.674 kb on + strand, within BWI76_RS23850 at 4976.674 kb on + strand, within BWI76_RS23850 at 4976.679 kb on + strand, within BWI76_RS23850 at 4976.679 kb on + strand, within BWI76_RS23850 at 4976.679 kb on + strand, within BWI76_RS23850 at 4976.681 kb on - strand, within BWI76_RS23850 at 4976.682 kb on - strand, within BWI76_RS23850 at 4976.690 kb on + strand, within BWI76_RS23850 at 4976.690 kb on + strand, within BWI76_RS23850 at 4976.698 kb on - strand, within BWI76_RS23850 at 4976.707 kb on + strand, within BWI76_RS23850 at 4976.715 kb on - strand, within BWI76_RS23850 at 4976.720 kb on + strand, within BWI76_RS23850 at 4976.728 kb on - strand, within BWI76_RS23850 at 4976.729 kb on + strand, within BWI76_RS23850 at 4976.730 kb on + strand, within BWI76_RS23850 at 4976.730 kb on + strand, within BWI76_RS23850 at 4976.730 kb on + strand, within BWI76_RS23850 at 4976.730 kb on + strand, within BWI76_RS23850 at 4976.730 kb on + strand, within BWI76_RS23850 at 4976.730 kb on + strand, within BWI76_RS23850 at 4976.730 kb on + strand, within BWI76_RS23850 at 4976.730 kb on + strand, within BWI76_RS23850 at 4976.730 kb on + strand, within BWI76_RS23850 at 4976.738 kb on - strand, within BWI76_RS23850 at 4976.738 kb on - strand, within BWI76_RS23850 at 4976.738 kb on - strand, within BWI76_RS23850 at 4976.738 kb on - strand, within BWI76_RS23850 at 4976.738 kb on - strand, within BWI76_RS23850 at 4976.738 kb on - strand, within BWI76_RS23850 at 4976.738 kb on - strand, within BWI76_RS23850 at 4976.794 kb on - strand, within BWI76_RS23850 at 4976.812 kb on + strand, within BWI76_RS23850 at 4976.827 kb on - strand, within BWI76_RS23850 at 4976.831 kb on + strand, within BWI76_RS23850 at 4976.831 kb on + strand, within BWI76_RS23850 at 4976.831 kb on + strand, within BWI76_RS23850 at 4976.839 kb on - strand, within BWI76_RS23850 at 4976.839 kb on - strand, within BWI76_RS23850 at 4976.839 kb on - strand, within BWI76_RS23850 at 4976.839 kb on - strand, within BWI76_RS23850 at 4976.839 kb on - strand, within BWI76_RS23850 at 4976.851 kb on - strand, within BWI76_RS23850 at 4976.876 kb on + strand, within BWI76_RS23850 at 4976.884 kb on - strand, within BWI76_RS23850 at 4976.889 kb on + strand, within BWI76_RS23850 at 4976.969 kb on + strand, within BWI76_RS23850 at 4976.969 kb on + strand, within BWI76_RS23850 at 4976.989 kb on - strand, within BWI76_RS23850
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,975,300 + +1.7 4,975,337 - +0.4 4,975,382 + -1.0 4,975,382 + -1.7 4,975,387 + +0.0 4,975,387 + +0.7 4,975,387 + +0.3 4,975,395 - -1.2 4,975,395 - +3.0 4,975,483 + BWI76_RS23840 0.23 -1.3 4,975,483 + BWI76_RS23840 0.23 -1.7 4,975,483 + BWI76_RS23840 0.23 +0.0 4,975,483 + BWI76_RS23840 0.23 -0.3 4,975,483 + BWI76_RS23840 0.23 +0.1 4,975,488 + BWI76_RS23840 0.24 +0.7 4,975,491 - BWI76_RS23840 0.24 -3.7 4,975,600 + BWI76_RS23840 0.41 +1.3 4,975,690 + BWI76_RS23840 0.54 -1.8 4,975,843 - BWI76_RS23840 0.78 +0.6 4,975,920 - BWI76_RS23840 0.89 -1.4 4,975,987 + -0.7 4,976,034 - -0.2 4,976,213 + BWI76_RS23845 0.19 -1.5 4,976,242 - BWI76_RS23845 0.29 +1.2 4,976,251 - BWI76_RS23845 0.31 +0.5 4,976,350 + BWI76_RS23845 0.63 -0.8 4,976,358 - BWI76_RS23845 0.66 +0.4 4,976,358 - BWI76_RS23845 0.66 -0.5 4,976,358 - BWI76_RS23845 0.66 +0.7 4,976,361 + BWI76_RS23845 0.67 +1.9 4,976,412 + BWI76_RS23845 0.83 +1.4 4,976,451 - -1.5 4,976,484 - -0.5 4,976,516 + +2.1 4,976,517 - +0.3 4,976,538 - +0.8 4,976,544 + -0.0 4,976,563 + +0.3 4,976,567 + -1.5 4,976,571 - +0.7 4,976,593 + BWI76_RS23850 0.11 +0.4 4,976,604 - BWI76_RS23850 0.12 -0.0 4,976,604 - BWI76_RS23850 0.12 +0.3 4,976,612 + BWI76_RS23850 0.13 +1.3 4,976,638 + BWI76_RS23850 0.17 -0.3 4,976,638 + BWI76_RS23850 0.17 +0.5 4,976,640 + BWI76_RS23850 0.17 -0.9 4,976,640 - BWI76_RS23850 0.17 -1.1 4,976,648 - BWI76_RS23850 0.18 +1.6 4,976,653 + BWI76_RS23850 0.19 -0.7 4,976,653 + BWI76_RS23850 0.19 -2.4 4,976,653 + BWI76_RS23850 0.19 -0.1 4,976,671 + BWI76_RS23850 0.21 -2.9 4,976,671 + BWI76_RS23850 0.21 +1.7 4,976,673 + BWI76_RS23850 0.22 -1.5 4,976,673 + -0.7 4,976,674 + BWI76_RS23850 0.22 +0.6 4,976,674 + BWI76_RS23850 0.22 +1.7 4,976,679 + BWI76_RS23850 0.22 -1.7 4,976,679 + BWI76_RS23850 0.22 +0.9 4,976,679 + BWI76_RS23850 0.22 +0.0 4,976,681 - BWI76_RS23850 0.23 +1.2 4,976,682 - BWI76_RS23850 0.23 -0.4 4,976,690 + BWI76_RS23850 0.24 -0.0 4,976,690 + BWI76_RS23850 0.24 +0.8 4,976,698 - BWI76_RS23850 0.25 +0.0 4,976,707 + BWI76_RS23850 0.26 +1.1 4,976,715 - BWI76_RS23850 0.27 +0.9 4,976,720 + BWI76_RS23850 0.28 +0.9 4,976,728 - BWI76_RS23850 0.29 -1.9 4,976,729 + BWI76_RS23850 0.29 -1.5 4,976,730 + BWI76_RS23850 0.29 +1.1 4,976,730 + BWI76_RS23850 0.29 -3.2 4,976,730 + BWI76_RS23850 0.29 -1.3 4,976,730 + BWI76_RS23850 0.29 +0.3 4,976,730 + BWI76_RS23850 0.29 +0.3 4,976,730 + BWI76_RS23850 0.29 -1.0 4,976,730 + BWI76_RS23850 0.29 +0.9 4,976,730 + BWI76_RS23850 0.29 +0.6 4,976,730 + BWI76_RS23850 0.29 +1.3 4,976,738 - BWI76_RS23850 0.31 +1.0 4,976,738 - BWI76_RS23850 0.31 +0.3 4,976,738 - BWI76_RS23850 0.31 -0.0 4,976,738 - BWI76_RS23850 0.31 -0.7 4,976,738 - BWI76_RS23850 0.31 -2.0 4,976,738 - BWI76_RS23850 0.31 -1.2 4,976,738 - BWI76_RS23850 0.31 +0.7 4,976,794 - BWI76_RS23850 0.38 -0.0 4,976,812 + BWI76_RS23850 0.41 -0.3 4,976,827 - BWI76_RS23850 0.43 +0.4 4,976,831 + BWI76_RS23850 0.43 +1.4 4,976,831 + BWI76_RS23850 0.43 -0.7 4,976,831 + BWI76_RS23850 0.43 +0.2 4,976,839 - BWI76_RS23850 0.44 -3.0 4,976,839 - BWI76_RS23850 0.44 -0.7 4,976,839 - BWI76_RS23850 0.44 +0.1 4,976,839 - BWI76_RS23850 0.44 -1.5 4,976,839 - BWI76_RS23850 0.44 +0.9 4,976,851 - BWI76_RS23850 0.46 +2.0 4,976,876 + BWI76_RS23850 0.50 -1.3 4,976,884 - BWI76_RS23850 0.51 +0.2 4,976,889 + BWI76_RS23850 0.51 +0.6 4,976,969 + BWI76_RS23850 0.62 -0.4 4,976,969 + BWI76_RS23850 0.62 -1.5 4,976,989 - BWI76_RS23850 0.65 -0.3
Or see this region's nucleotide sequence