Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23105 and BWI76_RS23110 overlap by 4 nucleotides BWI76_RS23110 and BWI76_RS23115 are separated by 18 nucleotides BWI76_RS23115 and BWI76_RS23120 are separated by 10 nucleotides BWI76_RS23120 and BWI76_RS23125 are separated by 14 nucleotides
BWI76_RS23105: BWI76_RS23105 - propanediol utilization protein PduA, at 4,817,599 to 4,817,883
_RS23105
BWI76_RS23110: BWI76_RS23110 - microcompartment protein PduB, at 4,817,880 to 4,818,692
_RS23110
BWI76_RS23115: BWI76_RS23115 - propanediol dehydratase large subunit, at 4,818,711 to 4,820,375
_RS23115
BWI76_RS23120: BWI76_RS23120 - propanediol dehydratase medium subunit, at 4,820,386 to 4,821,045
_RS23120
BWI76_RS23125: BWI76_RS23125 - propanediol dehydratase small subunit, at 4,821,060 to 4,821,581
_RS23125
Position (kb) 4818
4819
4820
4821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.714 kb on + strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.722 kb on - strand, within BWI76_RS23105 at 4817.724 kb on + strand, within BWI76_RS23105 at 4817.724 kb on + strand, within BWI76_RS23105 at 4817.724 kb on + strand, within BWI76_RS23105 at 4817.724 kb on + strand, within BWI76_RS23105 at 4817.724 kb on + strand, within BWI76_RS23105 at 4817.724 kb on + strand, within BWI76_RS23105 at 4817.732 kb on - strand, within BWI76_RS23105 at 4817.732 kb on - strand, within BWI76_RS23105 at 4817.737 kb on - strand, within BWI76_RS23105 at 4817.808 kb on + strand, within BWI76_RS23105 at 4817.816 kb on - strand, within BWI76_RS23105 at 4817.818 kb on + strand, within BWI76_RS23105 at 4817.870 kb on + strand at 4817.878 kb on - strand at 4817.890 kb on - strand at 4817.895 kb on - strand at 4817.906 kb on + strand at 4817.906 kb on + strand at 4817.954 kb on - strand at 4818.018 kb on - strand, within BWI76_RS23110 at 4818.018 kb on - strand, within BWI76_RS23110 at 4818.054 kb on - strand, within BWI76_RS23110 at 4818.054 kb on - strand, within BWI76_RS23110 at 4818.076 kb on - strand, within BWI76_RS23110 at 4818.145 kb on + strand, within BWI76_RS23110 at 4818.153 kb on - strand, within BWI76_RS23110 at 4818.153 kb on - strand, within BWI76_RS23110 at 4818.236 kb on - strand, within BWI76_RS23110 at 4818.322 kb on - strand, within BWI76_RS23110 at 4818.374 kb on + strand, within BWI76_RS23110 at 4818.374 kb on + strand, within BWI76_RS23110 at 4818.530 kb on - strand, within BWI76_RS23110 at 4818.595 kb on - strand, within BWI76_RS23110 at 4818.689 kb on - strand at 4818.761 kb on - strand at 4818.932 kb on - strand, within BWI76_RS23115 at 4818.932 kb on - strand, within BWI76_RS23115 at 4818.932 kb on - strand, within BWI76_RS23115 at 4818.971 kb on + strand, within BWI76_RS23115 at 4819.258 kb on - strand, within BWI76_RS23115 at 4819.258 kb on - strand, within BWI76_RS23115 at 4819.340 kb on - strand, within BWI76_RS23115 at 4819.647 kb on - strand, within BWI76_RS23115 at 4819.728 kb on - strand, within BWI76_RS23115 at 4820.086 kb on - strand, within BWI76_RS23115 at 4820.093 kb on + strand, within BWI76_RS23115 at 4820.174 kb on - strand, within BWI76_RS23115 at 4820.192 kb on + strand, within BWI76_RS23115 at 4820.222 kb on - strand at 4820.350 kb on + strand at 4820.352 kb on + strand at 4820.458 kb on - strand, within BWI76_RS23120 at 4820.851 kb on + strand, within BWI76_RS23120 at 4820.920 kb on + strand, within BWI76_RS23120 at 4821.096 kb on + strand at 4821.290 kb on + strand, within BWI76_RS23125
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,817,714 + BWI76_RS23105 0.40 -0.7 4,817,714 + BWI76_RS23105 0.40 +0.3 4,817,714 + BWI76_RS23105 0.40 -1.5 4,817,714 + BWI76_RS23105 0.40 +0.5 4,817,714 + BWI76_RS23105 0.40 -2.5 4,817,714 + BWI76_RS23105 0.40 -0.4 4,817,714 + BWI76_RS23105 0.40 +0.1 4,817,714 + BWI76_RS23105 0.40 +1.4 4,817,714 + BWI76_RS23105 0.40 -0.3 4,817,714 + BWI76_RS23105 0.40 -2.4 4,817,714 + BWI76_RS23105 0.40 -0.7 4,817,714 + BWI76_RS23105 0.40 +0.9 4,817,714 + BWI76_RS23105 0.40 +0.0 4,817,714 + BWI76_RS23105 0.40 +0.5 4,817,714 + BWI76_RS23105 0.40 +0.2 4,817,714 + BWI76_RS23105 0.40 -0.4 4,817,714 + BWI76_RS23105 0.40 +1.0 4,817,714 + BWI76_RS23105 0.40 +0.8 4,817,714 + BWI76_RS23105 0.40 -3.6 4,817,714 + BWI76_RS23105 0.40 -0.5 4,817,714 + BWI76_RS23105 0.40 -1.6 4,817,714 + BWI76_RS23105 0.40 -3.0 4,817,714 + BWI76_RS23105 0.40 +0.2 4,817,714 + BWI76_RS23105 0.40 -0.6 4,817,714 + BWI76_RS23105 0.40 -0.5 4,817,714 + BWI76_RS23105 0.40 -0.3 4,817,714 + BWI76_RS23105 0.40 +0.2 4,817,714 + BWI76_RS23105 0.40 +0.4 4,817,714 + BWI76_RS23105 0.40 +0.5 4,817,714 + BWI76_RS23105 0.40 +0.3 4,817,714 + BWI76_RS23105 0.40 +0.5 4,817,714 + BWI76_RS23105 0.40 +0.3 4,817,714 + BWI76_RS23105 0.40 +0.4 4,817,714 + BWI76_RS23105 0.40 -0.8 4,817,714 + BWI76_RS23105 0.40 -0.7 4,817,714 + BWI76_RS23105 0.40 +0.3 4,817,714 + BWI76_RS23105 0.40 +1.0 4,817,722 - BWI76_RS23105 0.43 -0.9 4,817,722 - BWI76_RS23105 0.43 -0.3 4,817,722 - BWI76_RS23105 0.43 +0.8 4,817,722 - BWI76_RS23105 0.43 -2.2 4,817,722 - BWI76_RS23105 0.43 -0.7 4,817,722 - BWI76_RS23105 0.43 +0.2 4,817,722 - BWI76_RS23105 0.43 -3.4 4,817,722 - BWI76_RS23105 0.43 +2.3 4,817,722 - BWI76_RS23105 0.43 -0.3 4,817,722 - BWI76_RS23105 0.43 +0.3 4,817,722 - BWI76_RS23105 0.43 +0.3 4,817,722 - BWI76_RS23105 0.43 -1.7 4,817,722 - BWI76_RS23105 0.43 +0.1 4,817,722 - BWI76_RS23105 0.43 -1.3 4,817,722 - BWI76_RS23105 0.43 -0.1 4,817,722 - BWI76_RS23105 0.43 -2.5 4,817,722 - BWI76_RS23105 0.43 -3.3 4,817,722 - BWI76_RS23105 0.43 -2.2 4,817,722 - BWI76_RS23105 0.43 +0.3 4,817,722 - BWI76_RS23105 0.43 +0.8 4,817,724 + BWI76_RS23105 0.44 -1.0 4,817,724 + BWI76_RS23105 0.44 -0.6 4,817,724 + BWI76_RS23105 0.44 +0.6 4,817,724 + BWI76_RS23105 0.44 +1.3 4,817,724 + BWI76_RS23105 0.44 -0.9 4,817,724 + BWI76_RS23105 0.44 -2.1 4,817,732 - BWI76_RS23105 0.47 -1.5 4,817,732 - BWI76_RS23105 0.47 +0.3 4,817,737 - BWI76_RS23105 0.48 -3.0 4,817,808 + BWI76_RS23105 0.73 +0.6 4,817,816 - BWI76_RS23105 0.76 +0.2 4,817,818 + BWI76_RS23105 0.77 -0.4 4,817,870 + -0.4 4,817,878 - -3.4 4,817,890 - +0.5 4,817,895 - +0.2 4,817,906 + +0.4 4,817,906 + -0.2 4,817,954 - +0.3 4,818,018 - BWI76_RS23110 0.17 +0.2 4,818,018 - BWI76_RS23110 0.17 +2.1 4,818,054 - BWI76_RS23110 0.21 +0.1 4,818,054 - BWI76_RS23110 0.21 -0.6 4,818,076 - BWI76_RS23110 0.24 +0.7 4,818,145 + BWI76_RS23110 0.33 +0.1 4,818,153 - BWI76_RS23110 0.34 -1.1 4,818,153 - BWI76_RS23110 0.34 +0.1 4,818,236 - BWI76_RS23110 0.44 -0.9 4,818,322 - BWI76_RS23110 0.54 +0.1 4,818,374 + BWI76_RS23110 0.61 +0.5 4,818,374 + BWI76_RS23110 0.61 +0.3 4,818,530 - BWI76_RS23110 0.80 -0.9 4,818,595 - BWI76_RS23110 0.88 +0.4 4,818,689 - -0.3 4,818,761 - -2.1 4,818,932 - BWI76_RS23115 0.13 +0.3 4,818,932 - BWI76_RS23115 0.13 +0.0 4,818,932 - BWI76_RS23115 0.13 +1.8 4,818,971 + BWI76_RS23115 0.16 +1.6 4,819,258 - BWI76_RS23115 0.33 +0.6 4,819,258 - BWI76_RS23115 0.33 -0.1 4,819,340 - BWI76_RS23115 0.38 -2.4 4,819,647 - BWI76_RS23115 0.56 -0.3 4,819,728 - BWI76_RS23115 0.61 +0.5 4,820,086 - BWI76_RS23115 0.83 +2.1 4,820,093 + BWI76_RS23115 0.83 +0.5 4,820,174 - BWI76_RS23115 0.88 -0.3 4,820,192 + BWI76_RS23115 0.89 +0.3 4,820,222 - +0.6 4,820,350 + +0.3 4,820,352 + +0.7 4,820,458 - BWI76_RS23120 0.11 +0.0 4,820,851 + BWI76_RS23120 0.70 +0.1 4,820,920 + BWI76_RS23120 0.81 +0.2 4,821,096 + -1.1 4,821,290 + BWI76_RS23125 0.44 +0.6
Or see this region's nucleotide sequence