Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22095

Experiment: LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22085 and BWI76_RS22090 are separated by 91 nucleotidesBWI76_RS22090 and BWI76_RS22095 are separated by 131 nucleotidesBWI76_RS22095 and BWI76_RS22100 are separated by 15 nucleotides BWI76_RS22085: BWI76_RS22085 - L-valine transporter subunit YgaH, at 4,610,725 to 4,611,060 _RS22085 BWI76_RS22090: BWI76_RS22090 - transcriptional regulator, at 4,611,152 to 4,611,682 _RS22090 BWI76_RS22095: BWI76_RS22095 - multidrug export protein EmrA, at 4,611,814 to 4,612,986 _RS22095 BWI76_RS22100: BWI76_RS22100 - multidrug effux MFS transporter subunit EmrB, at 4,613,002 to 4,614,540 _RS22100 Position (kb) 4611 4612 4613Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4610.964 kb on - strand, within BWI76_RS22085at 4611.016 kb on + strand, within BWI76_RS22085at 4611.016 kb on + strand, within BWI76_RS22085at 4611.504 kb on + strand, within BWI76_RS22090at 4611.570 kb on + strand, within BWI76_RS22090at 4611.615 kb on + strand, within BWI76_RS22090at 4611.683 kb on + strandat 4612.093 kb on - strandat 4612.204 kb on - strand, within BWI76_RS22095at 4612.390 kb on - strand, within BWI76_RS22095at 4612.997 kb on + strandat 4613.131 kb on - strandat 4613.221 kb on - strand, within BWI76_RS22100at 4613.901 kb on - strand, within BWI76_RS22100

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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4,610,964 - BWI76_RS22085 0.71 -2.5
4,611,016 + BWI76_RS22085 0.87 +0.4
4,611,016 + BWI76_RS22085 0.87 +0.1
4,611,504 + BWI76_RS22090 0.66 -1.5
4,611,570 + BWI76_RS22090 0.79 +2.0
4,611,615 + BWI76_RS22090 0.87 -2.5
4,611,683 + -2.8
4,612,093 - +1.3
4,612,204 - BWI76_RS22095 0.33 +1.3
4,612,390 - BWI76_RS22095 0.49 +1.9
4,612,997 + -1.0
4,613,131 - -0.3
4,613,221 - BWI76_RS22100 0.14 -4.3
4,613,901 - BWI76_RS22100 0.58 +0.8

Or see this region's nucleotide sequence